PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100149350111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 156aa MW: 17200.6 Da PI: 9.7098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00055 | 108 | 145 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L +l+ + +K + a++L +A+ YI+ L Ote100149350111|100149350111 108 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFL 145 6678889999999999998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.512 | 96 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-6 | 106 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-5 | 106 | 150 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-9 | 106 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
LIRTANGGLR RQRLVYQQRG FSGEEDKAEI GHKMQHKSLE NCERQILNNS SNAAASYAYC 60 AGNIEFAAAK YCATSEIFMK CNSNSDGGAA KKLKANPITS SQTGIKVRKE KLGDRITALH 120 QLVSPFGKTD TASVLLEAIG YIRFLHRQIE VTFLCT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078299.1 | 6e-38 | transcription factor bHLH68 | ||||
TrEMBL | A0A4D8Y0J2 | 2e-39 | A0A4D8Y0J2_SALSN; Uncharacterized protein | ||||
STRING | XP_010249647.1 | 1e-33 | (Nelumbo nucifera) | ||||
STRING | XP_010254048.1 | 9e-34 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15444 | 5 | 6 |