PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100149170011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 808aa    MW: 88979.6 Da    PI: 5.8699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100149170011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20133188156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r+k +++t+ q++eLe+ F+ n++p++++r eL k+lgL+ rqVk+WFqNrR+++k
  Ote100149170011|100149170011 133 RKKYHRHTAFQIQELEASFKDNPHPDEKARLELGKRLGLEGRQVKFWFQNRRTQMK 188
                                   7999*************************************************999 PP
2START148.56.1e-473395862205
                                   HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG... CS
                         START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke... 70 
                                   +a +a++el+k+a+ ++p+W+++     es+n de+ + f++  +     + +ea ra+g+v  +++ lve l+d      
  Ote100149170011|100149170011 339 IAMAAMDELIKLAQPDSPLWFRDLegngESLNLDEYAKMFSSCIGikpshFVTEATRATGNVMINSMPLVEALMDALHdle 419
                                   7889************************************88877999999************999999999999888889 PP

                                   .....................CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.T CS
                         START  71 .....................qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlg 119
                                                        qW+e +     +a+tl+ is+       g+lql++ae+q +sp+vp R   f+R+++q+g
  Ote100149170011|100149170011 420 fcplddmrssinlvsafhvqkQWTELFLwnigSASTLDIISPElagsknGTLQLIQAEFQIPSPMVPvRQMKFIRFCKQHG 500
                                   ********************************************************************************* PP

                                   TS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS
                         START 120 agdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200
                                   ++ wv+vd+Svds  +       v +++lpSg++++ ++ng sk+tw+eh++++++++h l+r++++sg+a+ga++w++ l
  Ote100149170011|100149170011 501 EDMWVVVDISVDSLLHGIAGNFPVNCRRLPSGCIVQGTPNGCSKITWIEHTEYDESIVHHLYRPILRSGIAFGAQKWLSNL 581
                                   ****************987778899******************************************************** PP

                                   XXXXX CS
                         START 201 qrqce 205
                                   qrqce
  Ote100149170011|100149170011 582 QRQCE 586
                                   ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-20117190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-20118184IPR009057Homeodomain-like
PROSITE profilePS5007117.637130190IPR001356Homeobox domain
SMARTSM003891.5E-18132194IPR001356Homeobox domain
PfamPF000464.0E-18133188IPR001356Homeobox domain
CDDcd000865.25E-18133190No hitNo description
PROSITE profilePS5084837.762329590IPR002913START domain
SuperFamilySSF559613.98E-24331586No hitNo description
CDDcd088758.22E-97333586No hitNo description
SMARTSM002348.7E-26338587IPR002913START domain
PfamPF018521.1E-34439586IPR002913START domain
SuperFamilySSF559614.53E-10615799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MSFGGFTSKS SGYVSEASCG GEMVADGFCS YNIMSSGAMS QTLQMVQSSY SKPLFGTPPL  60
SLALVCTLSY YLLLLVYPKM ENLGEMGLIG ENYDSGLIGR TREDELESRS GSDNFDGGSG  120
DDENPTHNRS SKRKKYHRHT AFQIQELEAS FKDNPHPDEK ARLELGKRLG LEGRQVKFWF  180
QNRRTQMKTQ LERHENSVLK QENDKLRLEN MAMKEAMRSP ICENCGSPAI LGEVPMEQHH  240
LMIENARLKD ELNRLRHLAN KFLGSSGGSA PPIMSNSTLD LSVGRNGFGG LNSLDPAIPL  300
GLDFGNRTSN ACPVMSPNGP ALNMMNSGPS FDKSMFLEIA MAAMDELIKL AQPDSPLWFR  360
DLEGNGESLN LDEYAKMFSS CIGIKPSHFV TEATRATGNV MINSMPLVEA LMDALHDLEF  420
CPLDDMRSSI NLVSAFHVQK QWTELFLWNI GSASTLDIIS PELAGSKNGT LQLIQAEFQI  480
PSPMVPVRQM KFIRFCKQHG EDMWVVVDIS VDSLLHGIAG NFPVNCRRLP SGCIVQGTPN  540
GCSKITWIEH TEYDESIVHH LYRPILRSGI AFGAQKWLSN LQRQCELIAF IMSSATSNVD  600
HSAISPNGKK SIVKLAQRMT RSFCTGVCST VDEWEVVQDV DNTKLMMWKS SGNSGVPPGV  660
ILSASTTVWM PVPPQHLLDF LQNEKTRSHW DVLSQDGPMQ AMLRIPNGQD LDNNICILHA  720
SAPSDTNVVI LQETCGDALG WLMAHAAVPR FAIFPDCIAE SSGSLLTIGF QILVSNLPVA  780
QLTMESVNTV KSLIGRTHEG IKAGLDCN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076208.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A4D9BN740.0A0A4D9BN74_SALSN; Homeobox-leucine zipper protein
STRINGMigut.F00362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465