PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100148200031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 265aa    MW: 30219.8 Da    PI: 7.9054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100148200031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-122365246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Ote100148200031|100148200031 23 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 65
                                  569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-12228IPR009057Homeodomain-like
SuperFamilySSF466891.41E-21372IPR009057Homeodomain-like
PROSITE profilePS5129422.1091771IPR017930Myb domain
SMARTSM007172.3E-112169IPR001005SANT/Myb domain
PfamPF002493.8E-112365IPR001005SANT/Myb domain
CDDcd001673.49E-82567No hitNo description
Gene3DG3DSA:1.10.10.606.7E-192968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPNI KHGGFTEEED NIICSLYISI GSRWSIIAAQ LPGRTDNDIK  60
NYWNTRLKKK LLGRRRQSNM NRVNSSGQET RDANEEGSTY NLQNLSSSAM ERLQLHMQLQ  120
RLQHPFSFYN NPALWPKLNP LQQKMIQTLQ SFNEKQTTIV SPQHPPINHN SKGDETEICV  180
NGFSSSESSF GLNIDGGNLV ESDMMEPNGG NIQVNSGFTQ AELDDLLNDK SSSFLPEEMV  240
DASKSSSQTW WSNXXXXXXX XVRHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079436.11e-103transcription factor MYB36-like
SwissprotQ9FKL21e-67MYB36_ARATH; Transcription factor MYB36
TrEMBLU5KKB11e-110U5KKB1_SALMI; MYB-like protein 1
STRINGEOY317647e-92(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]