PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100148200001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 284aa    MW: 32395.2 Da    PI: 7.1009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100148200001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-124284246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Ote100148200001|100148200001 42 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 84
                                  569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.472135IPR017877Myb-like domain
SuperFamilySSF466893.76E-221791IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-121847IPR009057Homeodomain-like
PROSITE profilePS5129422.1093690IPR017930Myb domain
SMARTSM007172.3E-114088IPR001005SANT/Myb domain
PfamPF002494.2E-114284IPR001005SANT/Myb domain
CDDcd001674.71E-84486No hitNo description
Gene3DG3DSA:1.10.10.607.4E-194887IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MREGRRNAET LEGIEDFLGL KRCGKSCRLR WLNYLRPNIK HGGFTEEEDN IICSLYISIG  60
SRWSIIAAQL PGRTDNDIKN YWNTRLKKKL LGRRRQSNMN RVNSSGQETR DANEEGSTYN  120
LQNLSSSAME RLQLHMQLQR LQHPFSFYNN PALWPKLNPL QQKMIQTLQS FNEKQTTIVS  180
PQHPPINHNS KGDETEICVN GFSSSESSFG LNIDGGNLVE SDMMEPNGGN IQVNSGFTQA  240
ELDDLLNDKS SSFLPEEMVD ASKSSSQTWW SNXXXXXXXX VRHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-19229040108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079436.11e-104transcription factor MYB36-like
SwissprotQ9FKL29e-69MYB36_ARATH; Transcription factor MYB36
TrEMBLU5KKB11e-111U5KKB1_SALMI; MYB-like protein 1
STRINGEOY317646e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]