PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100146290031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | CPP | ||||||||
Protein Properties | Length: 227aa MW: 24898.3 Da PI: 6.7452 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23 | 1.5e-07 | 1 | 25 | 17 | 42 |
TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42 YCeCfa+g++C+ C+C +C+N+ e+ Ote100146290031|100146290031 1 YCECFASGVYCDG-CNCVNCHNNVEN 25 *************.********9875 PP | |||||||
2 | TCR | 53.1 | 6.5e-17 | 109 | 148 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Ote100146290031|100146290031 109 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 148 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 32.172 | 1 | 149 | IPR005172 | CRC domain |
SMART | SM01114 | 0.0071 | 1 | 25 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.5E-5 | 1 | 22 | IPR005172 | CRC domain |
SMART | SM01114 | 6.2E-20 | 109 | 150 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.6E-13 | 112 | 147 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
YCECFASGVY CDGCNCVNCH NNVENEAARR EAVEATLERN PNAFRPKIAS SPHGTRDSGN 60 ASCWVVIPGE QPNCLLWGSI TMLMSPEVLE VVDSMHMQEE AGEVLVSGKH NKGCHCKKSG 120 CLKKYCECFQ ANILCSENCK CMDCKNYEGS EERQALFHGE HANNIAYIQQ AANAAITGAI 180 GSSGYGSPPL NKKRKGHDLL YGSTMKDPVH RLGQLQQVLL FALFVFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-21 | 1 | 158 | 25 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-21 | 1 | 158 | 25 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093606.1 | 1e-110 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 5e-90 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A4D9C5L5 | 1e-112 | A0A4D9C5L5_SALSN; Uncharacterized protein | ||||
STRING | XP_006475649.1 | 1e-106 | (Citrus sinensis) | ||||
STRING | XP_006451190.1 | 1e-106 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |