PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100146200021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 718aa MW: 76871.1 Da PI: 7.5999

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100146200021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9.3e-08	229	257	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r+ W+te+d++l av+++G W+ Ia+ Ote100146200021\|100146200021 229 RKIWSTEDDLKLTAAVQKHGEQKWANIAS 257 567************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.551	224	268	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.3E-7	226	269	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-9	227	269	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-4	228	279	IPR001005	SANT/Myb domain
CDD	cd00167	9.77E-6	232	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MDEKSKRNGG SVTEEAVSSL LQRYSVKTVL KLLKEVAISA GQKIDWNAIV KNTATGISNA 60 REYQMLWRHL AYGQTLIDQI DDSAIPLDDD SDLEYEVEPF PAVSRESSVE AAACVKVLVA 120 SDYPIDHHVP NNSTVEAPLT INVPMFKAPS DSSLPANAMH GANIIIPVSV QKEPLSSSTS 180 GAKRPRDGKP GVDVPPLQKR KIWSAEDDLK TKRPRDGKPG VDVPAPQKRK IWSTEDDLKL 240 TAAVQKHGEQ KWANIASEDF KNDRTPAELS LDLYEKPRRL AFGQQHGQQY AFITIFQQXX 300 XXXXXXXXXX CQRWATIRKK RGNLNAGTSA ELSEARKAAT RAILLALEPR GNNLKAARPM 360 SNVLMNNYFV SLFLCAPGKS SCNHFDNLAI LISVVGAKTT QHESQMAYAP QSDPQVGTAG 420 PPKPQVLTER SQMNSSSSPT SMIKVAAVAA GACIATPADA SSVNEVAARS QNVVYIRTGN 480 SSSTRPSTTT MSNQLSGNNF SRNGPTKAPV SAYASTVPNL QLGVAKDKQG SSIKPMELVG 540 QSNPVGTTVF LDRSSVNATT STPNKIVETA EVAGFSTSAS EMKEPVQRDR VAGEDNIHLK 600 AAVELISENQ SGSIGNMSKP EVDKCASASG NTHTQGDQTS ISLSHPVNQP QDDGVALPCS 660 EVEDNGKKHG ATVSSGKEFH DPTSSKGKHA DLSCKSLNGS GEGSTINTIA IAGDEANN

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MDEKSKRNGG SVTEEAVSSL LQRYSVKTVL KLLKEVAISA GQKIDWNAIV KNTATGISNA  60
REYQMLWRHL AYGQTLIDQI DDSAIPLDDD SDLEYEVEPF PAVSRESSVE AAACVKVLVA  120
SDYPIDHHVP NNSTVEAPLT INVPMFKAPS DSSLPANAMH GANIIIPVSV QKEPLSSSTS  180
GAKRPRDGKP GVDVPPLQKR KIWSAEDDLK TKRPRDGKPG VDVPAPQKRK IWSTEDDLKL  240
TAAVQKHGEQ KWANIASEDF KNDRTPAELS LDLYEKPRRL AFGQQHGQQY AFITIFQQXX  300
XXXXXXXXXX CQRWATIRKK RGNLNAGTSA ELSEARKAAT RAILLALEPR GNNLKAARPM  360
SNVLMNNYFV SLFLCAPGKS SCNHFDNLAI LISVVGAKTT QHESQMAYAP QSDPQVGTAG  420
PPKPQVLTER SQMNSSSSPT SMIKVAAVAA GACIATPADA SSVNEVAARS QNVVYIRTGN  480
SSSTRPSTTT MSNQLSGNNF SRNGPTKAPV SAYASTVPNL QLGVAKDKQG SSIKPMELVG  540
QSNPVGTTVF LDRSSVNATT STPNKIVETA EVAGFSTSAS EMKEPVQRDR VAGEDNIHLK  600
AAVELISENQ SGSIGNMSKP EVDKCASASG NTHTQGDQTS ISLSHPVNQP QDDGVALPCS  660
EVEDNGKKHG ATVSSGKEFH DPTSSKGKHA DLSCKSLNGS GEGSTINTIA IAGDEANN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084950.1	1e-175	uncharacterized protein LOC105167083
Refseq	XP_011084951.1	1e-175	uncharacterized protein LOC105167083

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37