PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100145020071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 693aa MW: 80245.6 Da PI: 7.1369

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100145020071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.3	5.3e-23	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwev 78 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ ++kk++ +++r+r++ r+gC+ak+ ++ke d++w v Ote100145020071\|100145020071 68 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPPRKKQAGEHQRERKSVRCGCDAKMYLSKEVvdgDSQWFV 147 59******************8888.***************************************9888899 PP FAR1 79 tkleleHnHela 90 ++++ HnHel Ote100145020071\|100145020071 148 VQFSNVHNHELL 159 ********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-19	291	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.089	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-8	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-5	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MASLQSKTVW MKRQQCPCGD WKCFVTYEGD TDECGVGSLS IKNDVGTTET MVSPYVGMVF 60 KSDDEAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPPR KKQAGEHQRE 120 RKSVRCGCDA KMYLSKEVVD GDSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEPDQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKVVQES DTLLTEKREN 240 DTVDLLEACR ANKEADPFFV YDVAFDENDK VENVAWSFGD SIHAYNMFGD VVYFDSTYSS 300 MVYGMLFGAW FGIDNHGKML LFGCALMQDE TRLSFAWSLQ AFLRFMKGRY PQTIISDIDP 360 GLREAIRSEM PNTKHVISLY NILPRISSWF SLSLGPRFSR FKYDFEELCR LESTEEFEFR 420 WNQMVSHFVI SSDKHIALLF SLRMCWALPY IRGCFLARMD SPSYWKSLDV TLKGVIKTQA 480 CLRGFLEQTG SLSNYKMKSH DHTQYMHLKT CLPIEEHARS VLTPFAFDRT QEEMVLAMQY 540 AASEIANGSY LVHHFKKVDG ERLVIWIPED EQIHCSCKEF ESSGILCRHA LRVLLFKNYF 600 QLPSKYLLNR WRQESSLLCY NGESNNKKKD EWYKEFHSLT GTLFSEAMLT KERSDFVHGQ 660 LTKELKGLIG QVRNMPSGDE VVTDVALSPN NAL

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MASLQSKTVW MKRQQCPCGD WKCFVTYEGD TDECGVGSLS IKNDVGTTET MVSPYVGMVF  60
KSDDEAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPPR KKQAGEHQRE  120
RKSVRCGCDA KMYLSKEVVD GDSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEPDQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKVVQES DTLLTEKREN  240
DTVDLLEACR ANKEADPFFV YDVAFDENDK VENVAWSFGD SIHAYNMFGD VVYFDSTYSS  300
MVYGMLFGAW FGIDNHGKML LFGCALMQDE TRLSFAWSLQ AFLRFMKGRY PQTIISDIDP  360
GLREAIRSEM PNTKHVISLY NILPRISSWF SLSLGPRFSR FKYDFEELCR LESTEEFEFR  420
WNQMVSHFVI SSDKHIALLF SLRMCWALPY IRGCFLARMD SPSYWKSLDV TLKGVIKTQA  480
CLRGFLEQTG SLSNYKMKSH DHTQYMHLKT CLPIEEHARS VLTPFAFDRT QEEMVLAMQY  540
AASEIANGSY LVHHFKKVDG ERLVIWIPED EQIHCSCKEF ESSGILCRHA LRVLLFKNYF  600
QLPSKYLLNR WRQESSLLCY NGESNNKKKD EWYKEFHSLT GTLFSEAMLT KERSDFVHGQ  660
LTKELKGLIG QVRNMPSGDE VVTDVALSPN NAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095923.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A4D9AZJ3	0.0	A0A4D9AZJ3_SALSN; Uncharacterized protein
STRING	Migut.M01435.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]