PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100145020061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 667aa MW: 76639.1 Da PI: 6.688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100145020061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.4	5e-23	97	188	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwev 78 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ ++kk++ +++r+r++ r+gC+ak+ ++ke d++w v Ote100145020061\|100145020061 97 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPPRKKQAGEHQRERKSVRCGCDAKMYLSKEVvdgDSQWFV 176 59******************8888.***************************************9888899 PP FAR1 79 tkleleHnHela 90 ++++ HnHel Ote100145020061\|100145020061 177 VQFSNVHNHELL 188 ********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-20	97	188	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-19	320	411	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.089	537	572	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-8	544	571	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-5	547	574	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MGQAKGCXXX XAAFEEAEKK REEEESKNDA VDSDSKTVWM KRQQCPCGDW KCFVTYEGDT 60 DECGVGSLSI KNDVGTTETM VSPYVGMVFK SDDEAFEYYG NFARKNGFSI RKERSRLSPQ 120 LGVYKRDFVC YRSGFAPPRK KQAGEHQRER KSVRCGCDAK MYLSKEVVDG DSQWFVVQFS 180 NVHNHELLED DQVRLLPAYR KIHEPDQERI LLLSKAGFPI HRIVKVLELE KGIQGGQLSF 240 LERDVRNFIQ NRKKVVQESD TLLTEKREND TVDLLEACRA NKEADPFFVY DVAFDENDKV 300 ENVAWSFGDS IHAYNMFGDV VYFDSTYSSM VYGMLFGAWF GIDNHGKMLL FGCALMQDET 360 RLSFAWSLQA FLRFMKGRYP QTIISDIDPG LREAIRSEMP NTKHVISLYN ILPRISSWFS 420 LSLGPRGCFL ARMDSPSYWK SLDVTLKGVI KTQACLRGFL EQTGSLSNYK MKSHDHTQYM 480 HLKTCLPIEE HARSVLTPFA FDRTQEEMVL AMQYAASEIA NGSYLVHHFK KVDGERLVIW 540 IPEDEQIHCS CKEFESSGIL CRHALRVLLF KNYFQLPSKY LLNRWRQESS LLCYNGESNN 600 KKKDEWYKEF HSLTGTLFSE AMLTKERSDF VHGQLTKELK GLIGQVRNMP SGDEVVTDVA 660 LSPNNAL

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MGQAKGCXXX XAAFEEAEKK REEEESKNDA VDSDSKTVWM KRQQCPCGDW KCFVTYEGDT  60
DECGVGSLSI KNDVGTTETM VSPYVGMVFK SDDEAFEYYG NFARKNGFSI RKERSRLSPQ  120
LGVYKRDFVC YRSGFAPPRK KQAGEHQRER KSVRCGCDAK MYLSKEVVDG DSQWFVVQFS  180
NVHNHELLED DQVRLLPAYR KIHEPDQERI LLLSKAGFPI HRIVKVLELE KGIQGGQLSF  240
LERDVRNFIQ NRKKVVQESD TLLTEKREND TVDLLEACRA NKEADPFFVY DVAFDENDKV  300
ENVAWSFGDS IHAYNMFGDV VYFDSTYSSM VYGMLFGAWF GIDNHGKMLL FGCALMQDET  360
RLSFAWSLQA FLRFMKGRYP QTIISDIDPG LREAIRSEMP NTKHVISLYN ILPRISSWFS  420
LSLGPRGCFL ARMDSPSYWK SLDVTLKGVI KTQACLRGFL EQTGSLSNYK MKSHDHTQYM  480
HLKTCLPIEE HARSVLTPFA FDRTQEEMVL AMQYAASEIA NGSYLVHHFK KVDGERLVIW  540
IPEDEQIHCS CKEFESSGIL CRHALRVLLF KNYFQLPSKY LLNRWRQESS LLCYNGESNN  600
KKKDEWYKEF HSLTGTLFSE AMLTKERSDF VHGQLTKELK GLIGQVRNMP SGDEVVTDVA  660
LSPNNAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095923.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A4D9C4W0	0.0	A0A4D9C4W0_SALSN; Uncharacterized protein
STRING	Migut.M01435.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]