PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100144450011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 336aa    MW: 36271 Da    PI: 4.9165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100144450011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-164691147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Ote100144450011|100144450011 46 KGPWSPDEDAMLSQLVINFGARNWSLIARGIP-GRSGKSCRLRWCNQ 91
                                  79******************************.***********985 PP
2Myb_DNA-binding57.92.3e-1898142147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r++++ eEd+++++a+  +G++ W++Iar ++ gRt++ +k++w++ 
  Ote100144450011|100144450011  98 RKPFSDEEDQIILQAHSIHGNK-WASIARLLP-GRTDNAIKNHWNST 142
                                   789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0954192IPR017930Myb domain
SuperFamilySSF466899.36E-3043139IPR009057Homeodomain-like
SMARTSM007176.9E-144594IPR001005SANT/Myb domain
PfamPF002499.5E-164691IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-254799IPR009057Homeodomain-like
CDDcd001671.40E-134890No hitNo description
PROSITE profilePS5129427.9193147IPR017930Myb domain
SMARTSM007172.3E-1797145IPR001005SANT/Myb domain
PfamPF002495.8E-1698142IPR001005SANT/Myb domain
CDDcd001672.37E-13100143No hitNo description
Gene3DG3DSA:1.10.10.602.9E-24100146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MXXXXXXXXX XEAEGKAGDG CVGDDEDLAM VEDGGGVGKK SSDRVKGPWS PDEDAMLSQL  60
VINFGARNWS LIARGIPGRS GKSCRLRWCN QLDPSVKRKP FSDEEDQIIL QAHSIHGNKW  120
ASIARLLPGR TDNAIKNHWN STLRRRCLEH GKSSQLESGN MVEDISIEKS KASSEETPSI  180
GDAYSVKSSE GKDVSSLERV DDSHLLDKAQ SEDKSTGPST VFRPVARFNA LAVYNPIVGS  240
ENVCPSPRVA FIPGTSRLPE GAYSEVNMVV PQQCGNGCCE ISNGIASLLG PEFIDYVEPP  300
SFTSHELAAL AADISNVAWS KSGLESSNIK AMDSMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40431464107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.11e-161transcription factor MYB1
SwissprotQ425753e-91MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A059PSP00.0A0A059PSP0_SALMI; MYB-related transcription factor
STRINGMigut.J00247.1.p1e-144(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]