PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100140760001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 588aa    MW: 65534.3 Da    PI: 6.7028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100140760001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-13423469455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Ote100140760001|100140760001 423 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 469
                                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-4279234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-18422486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-13422473No hitNo description
Gene3DG3DSA:4.10.280.102.6E-18423485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10423469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0092523571No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGIVDWSNED KAMAAAVLGT KAFDYLMSSS VSAECSLMAM GNDENLQNKL ADLVERPNSX  60
XXXXXXXXXX XXXXXXXXEL VLGWGDGCCR EVREDEESEV TRILKMRLED ESQQTLRKRV  120
LQRLHTLFGG GDDVNYAFGL DKVTDTEMFF LASMYFSFPR GEGGPGKCFG SSKHVWLSDA  180
LKASADYCVR SYLAKSAGMQ TIVLIPTDVG VVELGSVRCI PESLELVNMV ESSFLSFSSL  240
LRSKQTAAVA AVTDKKDTNG PIPNFAVGKI FGQDLNSSHV QFRENVSVRK GEVHNRTWEA  300
SGKNMNRLPF TSNRNGFHGA AWTQYSNVKL GNPVEVYSPQ TPNKSQNREE FVLNKFQHQK  360
PAQMQIDFSG ATPRPLNSHQ QNLESELSDV EASCKEEVAG LSEDKRPRKR GRKPSNGRDE  420
PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITELQK KLKDMESDRE  480
SISREASGSE AVSTREMQDL ASCVKIEAGD EEVTVRVSCL LDDHPASRVF RAINDVQATI  540
VEAKMATGSE RVFHTFVIKS HGSHMLTKEK LIEAFSCKPN SVHRLSLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28417482267Transcription factor MYC2
5gnj_B1e-28417482267Transcription factor MYC2
5gnj_E1e-28417482267Transcription factor MYC2
5gnj_F1e-28417482267Transcription factor MYC2
5gnj_G1e-28417482267Transcription factor MYC2
5gnj_I1e-28417482267Transcription factor MYC2
5gnj_M1e-28417482267Transcription factor MYC2
5gnj_N1e-28417482267Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093944.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2Z4K5120.0A0A2Z4K512_TECGR; BHLH1 protein
STRINGSolyc01g096050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]