PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100140730031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ERF

Protein Properties

Length: 435aa MW: 48831.4 Da PI: 6.8779

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100140730031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.2	5.4e-15	283	334	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ote100140730031\|100140730031 283 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 334 57**************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00367	9.1E-6	221	232	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-17	283	343	IPR016177	DNA-binding domain
CDD	cd00018	4.20E-25	283	343	No hit	No description
Pfam	PF00847	8.2E-10	283	334	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.019	284	342	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-33	284	348	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-18	284	342	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-6	324	344	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MGDQSNNNWF GFSLSADHHH TQPCSNFSNY PGIYYGPQAD NYSHLTVMPL KSDGSLCLME 60 AINRSQHQAP KLEDFFGHHD RGQMALSMYY QNNHENQAGL DFFTNSHHLQ LQEYSAFKAQ 120 EMYAPPPKES EIPPLPDNQK MGVCVEDNLG GGSTXXXXXX XXXXXXXXXX XXXXSMSPGS 180 HHVPVDCVSL ENKKRGPDKG DHKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN 240 SWGYDMEDKA XXXGLMIWPH SNTGDLPLTS TFRKSSGFSR GASIYRGVTR HHQHGRWQAR 300 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDIWRYDVER IMESNGLLPG 360 EMARRTKPAD FMVGGEGNGN GIEKAADLSS VVSSREASPD RNNIHLAALH HPLPSDFFSC 420 PAWIHSAAQM TADAS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MGDQSNNNWF GFSLSADHHH TQPCSNFSNY PGIYYGPQAD NYSHLTVMPL KSDGSLCLME  60
AINRSQHQAP KLEDFFGHHD RGQMALSMYY QNNHENQAGL DFFTNSHHLQ LQEYSAFKAQ  120
EMYAPPPKES EIPPLPDNQK MGVCVEDNLG GGSTXXXXXX XXXXXXXXXX XXXXSMSPGS  180
HHVPVDCVSL ENKKRGPDKG DHKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN  240
SWGYDMEDKA XXXGLMIWPH SNTGDLPLTS TFRKSSGFSR GASIYRGVTR HHQHGRWQAR  300
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDIWRYDVER IMESNGLLPG  360
EMARRTKPAD FMVGGEGNGN GIEKAADLSS VVSSREASPD RNNIHLAALH HPLPSDFFSC  420
PAWIHSAAQM TADAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269\|PubMed:10528263, ECO:0000269\|PubMed:10639184, ECO:0000269\|PubMed:10948255, ECO:0000269\|PubMed:11041883, ECO:0000269\|PubMed:12183381, ECO:0000269\|PubMed:12271029, ECO:0000269\|PubMed:12655002, ECO:0000269\|PubMed:8742706, ECO:0000269\|PubMed:8742707, ECO:0000269\|PubMed:9001406, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099413.1	1e-143	AP2-like ethylene-responsive transcription factor ANT isoform X2
Swissprot	Q38914	3e-95	ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBL	A0A4D8YWP4	1e-145	A0A4D8YWP4_SALSN; AP2-like factor, ANT lineage
STRING	Migut.H00323.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17490	2	4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Horstman A,Willemsen V,Boutilier K,Heidstra R AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci., 2014. 19(3): p. 146-57 [PMID:24280109] Li C, et al. Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis. PLoS ONE, 2014. 9(4): p. e94830 [PMID:24756087] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Randall RS, et al. AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins. Biol Open, 2015. 4(10): p. 1229-36 [PMID:26340943] Meng LS,Wang ZB,Yao SQ,Liu A The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis. J. Cell. Sci., 2015. 128(21): p. 3922-32 [PMID:26395398] Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] Krizek BA, et al. RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] Han H,Krizek BA AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels. Plant Mol. Biol., 2016. 92(4-5): p. 597-612 [PMID:27605095] Karpinska B,Alomrani SO,Foyer CH Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018. [PMID:28808105] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]