PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100138780141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21706.6 Da PI: 5.8539 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.8e-42 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+ +Cvlapyfp ++p kfa+vh++FGasn++kll++lpe++r da++s+vyeA+ar+rdP+yG++g+i Ote100138780141|100138780141 45 PCAACKTLRRRCTVKCVLAPYFPPTEPLKFAVVHRIFGASNIVKLLQQLPEDQRADAVASMVYEANARLRDPIYGCAGTIC 125 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+++++l++el+++++e Ote100138780141|100138780141 126 HLQKHIDELQVELSRMHAE 144 **************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.699 | 44 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-41 | 45 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MNXXXXXXXX XXAVLEADCC TSVVSPPLPA ASSLPRPPPS AVISPCAACK TLRRRCTVKC 60 VLAPYFPPTE PLKFAVVHRI FGASNIVKLL QQLPEDQRAD AVASMVYEAN ARLRDPIYGC 120 AGTICHLQKH IDELQVELSR MHAEILNMQC QHANLLHQFY MKMATLDVQE DLLPYHEDST 180 TFFDEEVVGE PLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-42 | 44 | 150 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-42 | 44 | 150 | 10 | 116 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027000.1 | 6e-70 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_011077047.1 | 5e-70 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 8e-60 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D8ZPQ8 | 3e-75 | A0A4D8ZPQ8_SALSN; Uncharacterized protein | ||||
STRING | Migut.F02029.1.p | 6e-70 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |