PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100137660061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YC | ||||||||
Protein Properties | Length: 52aa MW: 6243.83 Da PI: 9.1621 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 75.3 | 8.9e-24 | 1 | 49 | 4 | 49 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllsk 49 +fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++k Ote100137660061|100137660061 1 MFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAK 49 6999887889**************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.0E-14 | 6 | 49 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.1E-19 | 12 | 49 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-9 | 20 | 49 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 52 aa Download sequence Send to blast |
MFWTYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKX XL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-19 | 6 | 49 | 3 | 46 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460536.1 | 2e-29 | PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X1 | ||||
Refseq | XP_010460545.1 | 2e-29 | PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X2 | ||||
Swissprot | Q9FMV5 | 7e-30 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | R0GDZ3 | 8e-28 | R0GDZ3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0568s0464.1.p | 7e-29 | (Boechera stricta) | ||||
STRING | XP_010460536.1 | 7e-29 | (Camelina sativa) |