PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100135910151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 280aa    MW: 30754.8 Da    PI: 8.0585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100135910151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12556147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                  +++WT+eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Ote100135910151|100135910151  5 KQKWTAEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                                  79******************************99*9977***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.318161IPR017930Myb domain
SuperFamilySSF466892.08E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-13456IPR009057Homeodomain-like
SMARTSM007177.1E-7459IPR001005SANT/Myb domain
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116608.83E-21656No hitNo description
SMARTSM005265.0E-11117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-13119196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.152119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.9E-11121184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.4E-9122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAN  60
GQGPRDKSKT TKAKGNPAEA PATPLPTAQT STSIAPSAKD ASTDVVMLDS ARPLPEGINA  120
SKYNAMIFEA LSALKDLNGS DSGAIANFIE QRHEVPQNFR RALTSRLRIL VQQEKLEKVQ  180
NCFRIKNGAV LDTRPPVPRP KEVQQPRPIQ SIGYLGSTVE EAAEAAAYQI AQAENKSFVA  240
AESVKEAERV SRMAEDMESL LQFAIDCFDQ CSQGEILLMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093763.11e-164telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-171A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355