PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100135270001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25092 Da PI: 4.833 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Ote100135270001|100135270001 70 KKRRLSHDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARYK 123 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 113.8 | 1.1e-36 | 69 | 153 | 1 | 85 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls++qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktk lEk+y++Lk++ ++++ e + Ote100135270001|100135270001 69 EKKRRLSHDQVRFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARYKTKVLEKEYASLKARGENVEVEAVDCK 149 69***********************************************************************99988877 PP HD-ZIP_I/II 82 keve 85 +e + Ote100135270001|100135270001 150 QEEA 153 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.09E-19 | 58 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 68 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-16 | 70 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.37E-17 | 70 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 72 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-6 | 96 | 105 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-6 | 105 | 121 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDNSSMANLL LKNESSEVLH SLSWVPNSSP SFHGSASMGD ENTSEKPFFA QIDSTKLDEE 60 FNVCFHQPEK KRRLSHDQVR FLEKSFEVEN KLEPERKIQL AKELGLQPRQ VAIWFQNRRA 120 RYKTKVLEKE YASLKARGEN VEVEAVDCKQ EEAKSDVLDS YSPHCSNSQE EDDTLCKKSL 180 VPFACFPKLE MDGCDDLQPN SCNLGFPVQD QGTWFWQY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071034.1 | 6e-82 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q6K498 | 5e-31 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 5e-31 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | A0A4D9BNR6 | 1e-77 | A0A4D9BNR6_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_009766848.1 | 3e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Publications ? help Back to Top | |||
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