PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134910171
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 560aa    MW: 62402.1 Da    PI: 6.2409
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134910171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31e-21110202190
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L
  Ote100134910171|100134910171 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGIVWKFRHIYRGTPRRHLLTTGWSNFVNQKKL 188
                                   89****************************986445444..8999************************************ PP

                                   -TT-EEEEEE-SSSEE CS
                            B3  75 kegDfvvFkldgrsef 90 
                                    +gD++vF + +  ++
  Ote100134910171|100134910171 189 VAGDSIVFLRAE--NG 202
                                   ********9544..44 PP
2Auxin_resp111.86.7e-37235318183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a+++++FevvY+Pra+++eFvv  ++v++a++v+++ GmRfkmafetedss++++ +Gtv++v+  dp++WpnS+Wr
  Ote100134910171|100134910171 235 AASLAAKGQPFEVVYYPRAGSPEFVVGEASVRAAMRVQFCSGMRFKMAFETEDSSRISWfMGTVSSVHVDDPIHWPNSPWR 315
                                   688999*************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                    L+
  Ote100134910171|100134910171 316 ILQ 318
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-34102205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-30103210IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-19109196No hitNo description
PfamPF023624.9E-20110204IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561110212IPR003340B3 DNA binding domain
SMARTSM010193.5E-20110212IPR003340B3 DNA binding domain
PfamPF065072.5E-31235318IPR010525Auxin response factor
PROSITE profilePS5174515.369476559IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEKCLDPQLW HACAGGMAQI PPKNSKVYYF PQGHAEHANE NVDFLKFPRI APLILCRVAS  60
IMYLADSDSD EVFAKIRLVP LRGNESNVCH EESGFVGIDK NEEREKTNSF AKTLTQSDAN  120
NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGIVW KFRHIYRGTP RRHLLTTGWS  180
NFVNQKKLVA GDSIVFLRAE NGDLSLNGCF SSFLGGGEMG LKERGNVKAE AVVEAASLAA  240
KGQPFEVVYY PRAGSPEFVV GEASVRAAMR VQFCSGMRFK MAFETEDSSR ISWFMGTVSS  300
VHVDDPIHWP NSPWRILQVV WDEPDLLQNV KXXXXXXXXL VELVSTMAAG HLSPFSPARK  360
RPRLPQPDPF GPLHIPTLPT NXXXXXXXXX XXXSPLCCLG DNVPAGVQGA RHAHFEPSPP  420
ELRLQPFDFK LLDYAGPLPS LLAGYPLDNP IHNGNEAKRP MFNFPLEASS DEDFPIGRCK  480
VFVESEDVGR MLDLAMVASY EELYHKLSVM FGLDRSEFSS NVMYADARGN DRLVGDEPFS  540
DFIKNARRIK ILSDSCSVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-73532451373Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076975.10.0auxin response factor 18-like
SwissprotQ653H71e-177ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T70.0A0A191T8T7_SALMI; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]