PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134790011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 557aa    MW: 62589.5 Da    PI: 8.0335
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134790011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12274330155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Ote100134790011|100134790011 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 330
                                   78*******************77776664346655.77******************98 PP
2AP246.87.6e-15373424155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Ote100134790011|100134790011 373 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 424
                                   57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-14274340IPR016177DNA-binding domain
PfamPF008479.5E-10274330IPR001471AP2/ERF domain
CDDcd000181.21E-18274338No hitNo description
Gene3DG3DSA:3.30.730.101.2E-12275339IPR001471AP2/ERF domain
PROSITE profilePS5103217.359275338IPR001471AP2/ERF domain
SMARTSM003801.4E-22275344IPR001471AP2/ERF domain
PRINTSPR003673.0E-6276287IPR001471AP2/ERF domain
CDDcd000183.06E-25373434No hitNo description
SuperFamilySSF541711.05E-17373434IPR016177DNA-binding domain
PfamPF008471.1E-9373424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18374432IPR001471AP2/ERF domain
PROSITE profilePS5103219.019374432IPR001471AP2/ERF domain
SMARTSM003801.7E-34374438IPR001471AP2/ERF domain
PRINTSPR003673.0E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKTMNDDSSN LNNWLGFSLS PHMKMEANSP FTQPPPTSAV AQNLYYPNPA PILSVDHNSD  60
FHMPLKSDGS LCIMEALSRS HSQSQGMVPN SSPKLEDFLG GATMATHHYA IHPRDDDMVL  120
SLDTSFYSHE PFRHQQHHRY YSGXXXXXXX XXXXXXXXXX XXHLQLLANE ASTHQMPPHI  180
SEHDIPCLRA WMHHHHALXX XXXXXXDNTS MVESLSLSMS PVSQSSCITA STQISPTETS  240
ECVAMETKKR GAAKLGQKVT VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  300
GQTRKGRQGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYHQELEDMK NMSRQEYVAH  360
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  420
KFRGVNAVTN FDISRYDVEK IMASNTLPTG EIARRNKEVK HNAEPCGEWK MVLPNAHQSG  480
SLGNYXXXXX XXXXXXXXXX MAPPHFSNSS SLSSSREGSP EKYGHGLFLS PSANDDAAAA  540
WIPTAQLTAA HLPVFAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074331.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0G2SJF00.0A0A0G2SJF0_SALMI; AP12/EREBP Transcription Factors
STRINGGorai.010G028100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460