PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134770131
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 266aa    MW: 30351.7 Da    PI: 5.3709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134770131genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09781022348
                                   -HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqkyl 48 
                                    W+ I+++++ gRt++++k++w++yl
  Ote100134770131|100134770131  78 LWSQISHHLP-GRTDNDIKNHWHSYL 102
                                   5*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.6E-778102IPR001005SANT/Myb domain
PROSITE profilePS500906.55179102IPR017877Myb-like domain
SuperFamilySSF466894.16E-879110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1179110IPR009057Homeodomain-like
CDDcd001673.43E-679102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAMAAGTPFP SMPVSSASTY MEYSFSAKEK YHFRVMSTKK WEELQAKFSL AIMKTFYHHF  60
GEDAVESKSM NAATRALLWS QISHHLPGRT DNDIKNHWHS YLKKRVPKMA EEVEDKSRQF  120
QVLEPSTSSF KSTPQNSSFK SSENNEASLT DTDQSTRLTE SQREDQKCNL PKVLFAEWLS  180
VDKFNTSTAE DSKFIFEYGT ANSEGSSVHC QQLNEEVVGN EMHTESDLIC VDDILQSSFG  240
FKDQIESVAV SYFQGELNTY CDHLYK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549243.13e-56transcription factor LAF1-like
TrEMBLA0A059PSP55e-60A0A059PSP5_SALMI; MYB-related transcription factor
STRINGMigut.F00344.1.p5e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154