PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100134770111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 284aa MW: 31746.6 Da PI: 8.6858

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100134770111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.8e-17	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lvd ++q G gtW+ ++ g+ R++k+c++rw +yl Ote100134770111\|100134770111 29 KGAWTADEDKILVDFITQNGHGTWRNLPKLAGLLRCGKSCRLRWTNYL 76 79****************************99**********97 PP
2	Myb_DNA-binding	51.3	2.7e-16	82	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ +++++ lG++ W++Ia+++ gRt++++k++w+++l Ote100134770111\|100134770111 82 RGPFTPEEENMIIRLHSALGNK-WAAIASHLA-GRTDNDIKNFWNSHL 127 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.86	24	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.47E-28	27	123	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-10	28	78	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-13	29	76	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-20	30	83	IPR009057	Homeodomain-like
CDD	cd00167	9.22E-8	31	76	No hit	No description
PROSITE profile	PS51294	24.809	77	131	IPR017930	Myb domain
SMART	SM00717	1.8E-16	81	129	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	82	127	IPR001005	SANT/Myb domain
CDD	cd00167	5.31E-11	84	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.6E-27	84	130	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGMKREKVEG EKKKRKGRRP CCVREGVTKG AWTADEDKIL VDFITQNGHG TWRNLPKLAG 60 LLRCGKSCRL RWTNYLRPDI RRGPFTPEEE NMIIRLHSAL GNKWAAIASH LAGRTDNDIK 120 NFWNSHLRKR FDGKALNRPS SSSNTKSGSS TSHLAQWESV RLEAESRLSG STQLQLNETG 180 DFFLQLWNSK VGESFRNTND CGGAASHSPT SDSSSLTKVE SCKNPTSPVD QKIELWSCKK 240 ETEDVAAFSD SSKSYEIDDS SDSMLKLLLD FPVGDNDMAF LEGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-24	27	132	5	109	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076175.1	1e-132	transcription factor MYB3-like
Swissprot	Q9M2D9	4e-87	MYB17_ARATH; Transcription factor MYB17
TrEMBL	A0A059PRR8	1e-119	A0A059PRR8_SALMI; MYB-related transcription factor
STRING	Migut.F01122.1.p	3e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154