PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134680041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 689aa    MW: 76654.6 Da    PI: 7.5188
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134680041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.34.5e-25193242151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  Ote100134680041|100134680041 193 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQ 242
                                   79*******************.***************************** PP
2Response_reg51.55.7e-183212121109
                                   TTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEE CS
                  Response_reg  21 egyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfls 99 
                                   eg e+v+ ++ +e al+ l++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a + +  + + +  Ga d+l 
  Ote100134680041|100134680041  32 EGDEVVTKCSRAEVALKFLRDNRdgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDCKHVVMKGVTHGACDYLI 111
                                   5556799************999999**********************6644.8**************************** PP

                                   SS--HHHHHH CS
                  Response_reg 100 Kpfdpeelvk 109
                                   Kp+ +e+l +
  Ote100134680041|100134680041 112 KPVRMEALKN 121
                                   *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.51511127IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.6E-1121123IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.48E-1827126No hitNo description
PfamPF000723.9E-1531121IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.97E-2433134IPR011006CheY-like superfamily
PIRSFPIRSF0363927.8E-14736653IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.2E-2937152No hitNo description
SuperFamilySSF466894.3E-16190242IPR009057Homeodomain-like
PROSITE profilePS512949.216190248IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-25192242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-21193243IPR006447Myb domain, plants
PfamPF002493.3E-6195242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTLLALGSWK RCLEIATTKG KCGVSEIIGI LEGDEVVTKC SRAEVALKFL RDNRDGFDIV  60
ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDCKHVVMK GVTHGACDYL IKPVRMEALK  120
NIWQHVVRKK KHEWKEKDLE QSGSVEDGER QQKPCSDADY SSSANEGNWK NSRKRKDEED  180
EAEDKDDTST LKKPRVVWSV ELHQQFVTAV NQLGIDKAVP KKILELMNVP GLTRENVASH  240
LQLLPPLKLD NRMMQKYRLY LRRLSGQPQN GLGNSFMGPH DSTFGPLTSF NGLGLQALAS  300
SGQISPRSLA TLQAATFTRA TNTSHVDQQN IFSFENPNIR FLDGQQQHNN GNQVNLLHGI  360
PTNMDSKQLA ALHQSPQSFS NMHVNVHSVS GQSNSLPTQI VQPQSRTQML NEVRSSQILN  420
LPSSVGQPSL SQAIPGAVLS RYGIENVRAP TYSSLSQPSS VEFSRGLGMD LHGNTVPLAT  480
TSSGIANFSS KNTLQEELNS EMKGSRSFLP NFDAFNNLNQ SRTEDWGLEN VGSTFETPQK  540
GRVDVAPSIM VQPGFPSNQR SGHMRPTSVN KAVFSAASGI GNNTNLGQQL TSSHADNSLR  600
IKTERLPEMG FQNSHFSDNF GQQDLMTAFF KQQEEGMVPV ENEFGFDEYQ LDNLPGFVIL  660
KFAMQKTTPG IRWIFRRLIK EWKKIGMKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18192265464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071399.10.0two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ91e-154ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A4D9A8J20.0A0A4D9A8J2_SALSN; Two-component response regulator ARR-B family
STRINGEOY066390.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]