PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100134370021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CO-like
Protein Properties Length: 424aa    MW: 46369 Da    PI: 5.0812
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100134370021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06544639
                      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                  C+ ++e++++ +C+++   lC +C  + H+       H++
  Ote100134370021|100134370021  5 CDFCGEQRAIVYCRSDAASLCLSCDCTVHSAnalsrrHSR 44
                                  *************************999955667777765 PP
2CCT39.81.7e-143824101644
                           CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   +FeKk+rYesRKa+A+ R RvKGrFvk+ 
  Ote100134370021|100134370021 382 RFEKKVRYESRKARADVRRRVKGRFVKAG 410
                                   6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000215.95E-7447No hitNo description
SMARTSM003361.0E-7447IPR000315B-box-type zinc finger
CDDcd000214.45E-44783No hitNo description
PfamPF062032.4E-13350409IPR010402CCT domain
PROSITE profilePS5101710.268367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGYLCDFCGE QRAIVYCRSD AASLCLSCDC TVHSANALSR RHSRTLLCER CNSRPAFVRC  60
VEEKISLCRN CDWSGQTGPN RSPAXXXRQA VNCYSGCPSA SELSAVWPFL LNSSSVGDST  120
CEQEMGSMRI TDNRGIDNRD PVAKTNIRNE SLMGEASGLQ NVDLDRTVVW MESLTSLHDP  180
VTQNVDQPTA SSSSVVSKVL LSESKGNALC EDDAYYDNLD IDEIELDIEN YEELFGMALD  240
NPKNLFGNDG IFGMKDMSAS NCQGASAAEV NVAQPACSNA ASADSVISCK TDPNLCFARQ  300
AHSGLSFSGL TGENSAAGDF LDCGISSTPI AGDPPWYPAG PESSMPSTSR TNAVMRYKEK  360
KKTRNIWNFL ATRVSNSITI DRFEKKVRYE SRKARADVRR RVKGRFVKAG EAYDYDPLSP  420
SKSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A4D8ZM890.0A0A4D8ZM89_SALSN; Uncharacterized protein
STRINGMigut.M00064.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468