PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100131300001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 210aa    MW: 23790.2 Da    PI: 8.4884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100131300001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-142374155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  +r++h ++Er+RR+++N+ ++ Lr+l+P++    +++ + a+i+  A++++k+L+
  Ote100131300001|100131300001 23 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---FAQRGDQASIVGGAINFVKELE 74
                                  79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-162191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-112178No hitNo description
PROSITE profilePS5088815.6122273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-112374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-92879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAKPVRKRRR TKPMKNKQEM ENQRMTHIAV ERNRRRQMND YLAVLRSLMP PSFAQRGDQA  60
SIVGGAINFV KELEQLHQFL EANNPANSYA NPFSNFFTFP QYSTCPSNAM SETAAERRSS  120
IADVEVMMVE SHANIKLSTK RRPKQLLNLV AGFQSIGLTV LHLNITTVDH SVLYSFSVKV  180
EDECELSTVN DIATNVHDLV GMIEEESICS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.21e-112LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T43e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0H3Y8U21e-115A0A0H3Y8U2_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_010272971.12e-95(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]