PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100129990021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 377aa MW: 41194 Da PI: 7.9366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100129990021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.1e-05	267	305	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Ote100129990021\|100129990021 267 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 305 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.82E-5	265	309	No hit	No description
SuperFamily	SSF47459	9.03E-11	265	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-9	269	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MESASTHHHH LHQLQDQLVS SSCFGHPAFT AASHASLPPF FETKQLENAA VSSHLYTSSM 60 APDIAAAYNW PNNASTNLYD SDQDSQQHSR INQELADQYY RRYTDILSTI PQSTDDAAAK 120 FLLKSFSCGN KIPTTDHLYS HHDAANARGF SQILPSLHVS TFNQTAVTSP GSLGMDLEAL 180 DRLASSRFSG NFGILRDGFS NIGFDNMQQS HEAPPFYPSN KVSSASSNAV VEAKRNCDKM 240 EPKAHFQTAP KKSRLEARSS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY 300 IKFLQSQVET LSVPYMKASR NKPNRVTKGG GNGNENEESK RDLKSRGLCL VPLSCLSYIT 360 DGGGAAVWPP PHFGAPT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MESASTHHHH LHQLQDQLVS SSCFGHPAFT AASHASLPPF FETKQLENAA VSSHLYTSSM  60
APDIAAAYNW PNNASTNLYD SDQDSQQHSR INQELADQYY RRYTDILSTI PQSTDDAAAK  120
FLLKSFSCGN KIPTTDHLYS HHDAANARGF SQILPSLHVS TFNQTAVTSP GSLGMDLEAL  180
DRLASSRFSG NFGILRDGFS NIGFDNMQQS HEAPPFYPSN KVSSASSNAV VEAKRNCDKM  240
EPKAHFQTAP KKSRLEARSS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY  300
IKFLQSQVET LSVPYMKASR NKPNRVTKGG GNGNENEESK RDLKSRGLCL VPLSCLSYIT  360
DGGGAAVWPP PHFGAPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550876.1	1e-130	transcription factor bHLH110 isoform X3
TrEMBL	A0A4D9AVK1	1e-124	A0A4D9AVK1_SALSN; Uncharacterized protein
STRING	Migut.C00762.1.p	3e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27