PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100129680091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 542aa MW: 58654.1 Da PI: 5.9874

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100129680091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2e-05	175	214	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 E++R +r+++ Lr ++P a k++s +++L +Av+Y+ksL Ote100129680091\|100129680091 175 EKKR-RRMRKMVKALRGIVPGA-----KRMSSVAVLDEAVRYLKSL 214 5555.5899999*******9.....89*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.594	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-6	174	219	No hit	No description
SMART	SM00353	0.0015	174	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-5	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-8	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF04481	8.8E-84	293	528	IPR007570	Uncharacterised protein family Ycf23
Gene3D	G3DSA:3.20.20.70	7.0E-13	311	522	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51569	1.79E-19	312	505	No hit	No description
CDD	cd04722	2.25E-5	367	503	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003824	Molecular Function	catalytic activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MHSNQPNFSG KPMIPVGNQV GYMQNARIAS LFDGLVAPHI PPLSNVDIQT SDACPRNFII 60 FDQTSNRSQI MLHPEISSKM FYPGFGGEMP TLQDKLIQKE ATDEREVASQ LKEDSDDIDA 120 LLSTAYEEED EGSDDEVSTA RTNAIYECSS PDSCSNYEPV SKKRRSLFRK SYGSEKKRRR 180 MRKMVKALRG IVPGAKRMSS VAVLDEAVRY LKSLRVEVKK LGVGNWKEYI AVSCSAKELP 240 NDWVVDVPCS NLASLVLECY SISSPLQTPV SFHXXXXXXX XTTALLSTTK EAVLKDFHQR 300 RALKIISGLR NLDRDNVAAV VTAADKGGAT HVDIACDTDL VRLARSLTAL PVCVSSVDPT 360 AFPGAVEAGA TMVEIGNYDS FYEMGLIFSP EQILELTKET KRLLPCVVLS VTVPHTLSLP 420 DQVRLAEQLE LQGVDIIQTE GGKCCTPSKA GVLGLIEKAA PSLAAAYSIS RAVGIPVMSS 480 SGLSSVTAPM AIAAGASAVG VGSAINKLND VVAMIAEVKS IAESLNLSKR EGNVFDESRL 540 RL

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MHSNQPNFSG KPMIPVGNQV GYMQNARIAS LFDGLVAPHI PPLSNVDIQT SDACPRNFII  60
FDQTSNRSQI MLHPEISSKM FYPGFGGEMP TLQDKLIQKE ATDEREVASQ LKEDSDDIDA  120
LLSTAYEEED EGSDDEVSTA RTNAIYECSS PDSCSNYEPV SKKRRSLFRK SYGSEKKRRR  180
MRKMVKALRG IVPGAKRMSS VAVLDEAVRY LKSLRVEVKK LGVGNWKEYI AVSCSAKELP  240
NDWVVDVPCS NLASLVLECY SISSPLQTPV SFHXXXXXXX XTTALLSTTK EAVLKDFHQR  300
RALKIISGLR NLDRDNVAAV VTAADKGGAT HVDIACDTDL VRLARSLTAL PVCVSSVDPT  360
AFPGAVEAGA TMVEIGNYDS FYEMGLIFSP EQILELTKET KRLLPCVVLS VTVPHTLSLP  420
DQVRLAEQLE LQGVDIIQTE GGKCCTPSKA GVLGLIEKAA PSLAAAYSIS RAVGIPVMSS  480
SGLSSVTAPM AIAAGASAVG VGSAINKLND VVAMIAEVKS IAESLNLSKR EGNVFDESRL  540
RL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085259.1	1e-152	uncharacterized protein ycf23-like
TrEMBL	A0A4D8ZZU0	1e-148	A0A4D8ZZU0_SALSN; Uncharacterized protein