PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100128830121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 669aa MW: 74909.6 Da PI: 4.9286

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100128830121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	511	554	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el++++vkq+G++ ++ Ia+ ++ gRt++q+++++ k Ote100128830121\|100128830121 511 RARWSKQDTELFYEGVKQFGTD-FSMIAQLFP-GRTREQIRNKYKK 554 569*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.032	506	560	IPR017930	Myb domain
Pfam	PF15963	1.3E-25	507	588	No hit	No description
SMART	SM00717	4.5E-12	510	558	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-9	510	554	IPR009057	Homeodomain-like
CDD	cd00167	3.10E-10	513	554	No hit	No description
SuperFamily	SSF46689	3.36E-12	513	560	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MGDNVDPLND LLGVEPVKNA RAVGKFRPKP KLQSQKKATE KSSAASTQAI QTAHTAPHVL 60 SESIKIGKLS ESYVVPNQND KADLHDSVGT SVEENDNVLS GSEYIADSIH YSNTDAVDLF 120 VSNTKNIGGS VGTQVSSSID VSTYAFKADV PKDTCPSADL LVSNIDVPND KDNRQGTEEM 180 DVMDSINTAE LITKSGQNTS SVGLQSSTIQ PDSSEKDLSP ASQHDDVVDL SSLEFTHTLP 240 TESTSELCLS EDPMNLLEVP QLDSCTHTEG LPEIPAKLAS RRAKTGNNNG TLDPHPEQQN 300 ASTSSKENEA GRSLRPRNGK TNIRGLVDDD GDEILATREF CEEHPFNFAI DEENINNEQS 360 RVECESQKKN LKRKAKKTDN NKEKPPRKSK KAKEAAEQET QAKQKKFSHS TRRRRVDKNL 420 LNIPEDEFDP REVPLRDLIL LAEHREKEMK ADHATAGVLE TLRSADNSTG FHNDEANNYR 480 PXXXXXXXXI PVADDTTEYF NYHSRMDRTP RARWSKQDTE LFYEGVKQFG TDFSMIAQLF 540 PGRTREQIRN KYKKEERQKP LMLREALTTR SKDHSYFEKV IGDLKQMRAK EEKEDLEDSS 600 YQEGASIPDD DGAKHDYVEE EENGGVANKS TEARSSPVIG XXXXXXXXXX XXXXXXXXXX 660 PWNNLKWDM

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MGDNVDPLND LLGVEPVKNA RAVGKFRPKP KLQSQKKATE KSSAASTQAI QTAHTAPHVL  60
SESIKIGKLS ESYVVPNQND KADLHDSVGT SVEENDNVLS GSEYIADSIH YSNTDAVDLF  120
VSNTKNIGGS VGTQVSSSID VSTYAFKADV PKDTCPSADL LVSNIDVPND KDNRQGTEEM  180
DVMDSINTAE LITKSGQNTS SVGLQSSTIQ PDSSEKDLSP ASQHDDVVDL SSLEFTHTLP  240
TESTSELCLS EDPMNLLEVP QLDSCTHTEG LPEIPAKLAS RRAKTGNNNG TLDPHPEQQN  300
ASTSSKENEA GRSLRPRNGK TNIRGLVDDD GDEILATREF CEEHPFNFAI DEENINNEQS  360
RVECESQKKN LKRKAKKTDN NKEKPPRKSK KAKEAAEQET QAKQKKFSHS TRRRRVDKNL  420
LNIPEDEFDP REVPLRDLIL LAEHREKEMK ADHATAGVLE TLRSADNSTG FHNDEANNYR  480
PXXXXXXXXI PVADDTTEYF NYHSRMDRTP RARWSKQDTE LFYEGVKQFG TDFSMIAQLF  540
PGRTREQIRN KYKKEERQKP LMLREALTTR SKDHSYFEKV IGDLKQMRAK EEKEDLEDSS  600
YQEGASIPDD DGAKHDYVEE EENGGVANKS TEARSSPVIG XXXXXXXXXX XXXXXXXXXX  660
PWNNLKWDM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076930.1	1e-168	transcription factor TFIIIB component B''-like
TrEMBL	A0A4D9BY88	1e-179	A0A4D9BY88_SALSN; Transcription factor TFIIIB component B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5902	23	26