PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100128600051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 289aa    MW: 32696.2 Da    PI: 7.119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100128600051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16105150147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Ote100128600051|100128600051 105 RGHWKPSEDVKLRELVAAYGPQNWNLIAERLE-GRSGKSCRLRWYNQ 150
                                   899*****************************.************96 PP
2Myb_DNA-binding56.65.7e-18158201247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    ++T+eE+e+l +a++ +G++ W+ I+r ++ gRt++++k++w+ +
  Ote100128600051|100128600051 158 RAFTEEEEERLMEAHRIYGNK-WAFISRLFP-GRTDNSVKNHWHVL 201
                                   689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.873100151IPR017930Myb domain
SMARTSM007178.8E-15104153IPR001005SANT/Myb domain
PfamPF002494.7E-16105151IPR001005SANT/Myb domain
SuperFamilySSF466893.0E-28105198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-26106158IPR009057Homeodomain-like
CDDcd001671.48E-13108149No hitNo description
PROSITE profilePS5129425.959152206IPR017930Myb domain
SMARTSM007171.5E-14156204IPR001005SANT/Myb domain
PfamPF002491.9E-15158200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20159204IPR009057Homeodomain-like
CDDcd001675.15E-7168201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MHRHDAVHRH GGAAVQSPPS SLIDRLLHPM FSLDFSGKAD SGNALGLKTS ADLVHDQDDG  60
DEEEEDESES GVXXXXXXXX XXXXNGENPN SSRKRENGAT KFCSRGHWKP SEDVKLRELV  120
AAYGPQNWNL IAERLEGRSG KSCRLRWYNQ LDPKINKRAF TEEEEERLME AHRIYGNKWA  180
FISRLFPGRT DNSVKNHWHV LTARRSREKS KSYMKMKWAS SNPPPVETGR LSVQETATYN  240
CYGDEHLFDS NRGNSYSPVS TSQISFAAPI SPATDQYPTF IDFLGVGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331052057107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098643.21e-84myb-related protein A-like isoform X2
TrEMBLA0A059PRF81e-113A0A059PRF8_SALMI; MYB-related transcription factor
STRINGcassava4.1_009525m5e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470