PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100126410021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20023 Da PI: 10.5481 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk n+qvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++ Ote100126410021|100126410021 9 KRIENKVNQQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 66.2 | 1.1e-22 | 110 | 168 | 12 | 70 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 + s++ elakLk ++e Lqr+qR+l G++Le Ls+keLq+Le+qLe+slk+ Rs+K Ote100126410021|100126410021 110 QSPGSWNIELAKLKGRLEVLQRNQRNLTGDNLEFLSMKELQNLEHQLETSLKRLRSRKV 168 4456899**************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-35 | 2 | 104 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-28 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.034 | 112 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.3E-17 | 114 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGRGKVELKR IENKVNQQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD 60 SCGNSQLDWR RSFCGSKVGG VLFRLFCMER ILERYDRSSS VDGQKQPDLQ SPGSWNIELA 120 KLKGRLEVLQ RNQRNLTGDN LEFLSMKELQ NLEHQLETSL KRLRSRKVSW RGGGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086917.1 | 9e-67 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_011086918.1 | 9e-67 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q42429 | 2e-66 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A4D9C5I8 | 2e-77 | A0A4D9C5I8_SALSN; MADS-box transcription factor, plant | ||||
STRING | XP_009792071.1 | 1e-65 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
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