PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100124510011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 266aa    MW: 29349.4 Da    PI: 11.0936
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100124510011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-1260104347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +W++eE+ l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
  Ote100124510011|100124510011  60 PWSEEEHRLFLLGLRKVGKGDWRGISRNHVKTRTPTQVASHAQKY 104
                                   8**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.15853109IPR017930Myb domain
SuperFamilySSF466892.39E-1655109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1656107IPR006447Myb domain, plants
SMARTSM007171.2E-657107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-1059103IPR009057Homeodomain-like
PfamPF002496.3E-1060104IPR001005SANT/Myb domain
CDDcd001675.66E-1060105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLFGVRVLTE GSFRKSFSLN NLAQYDQLPQ DSNNDVAAGY VSDDVVHASG RSRGRKRGVP  60
WSEEEHRLFL LGLRKVGKGD WRGISRNHVK TRTPTQVASH AQKYFLHRNN HSRRRRRSSL  120
FDITNDAVFG SEADDQMYLR NISQPQATQN QTKLSKNKKF QITNSPMAIT PLDVPITAEX  180
XXXXXXPPLG QVNQLSNSLN PIRPIPISPV PPSSKMANLN LKKLTAATIE PPQHSLPARH  240
ASAFQAMPSG AAGFNGGSGD SMISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086441.11e-111transcription factor MYB1R1
TrEMBLA0A4D9BPI41e-112A0A4D9BPI4_SALSN; Uncharacterized protein
STRINGMigut.L01371.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114232225