PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100124380051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25713.2 Da PI: 8.9124 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r r +lg+f+taeeAa a++ a+ kl+g Ote100124380051|100124380051 79 LYRGVRQRH-WGKWVAEIRLPKN---RSRLWLGTFDTAEEAAVAYDTAAYKLRG 128 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.13E-33 | 78 | 138 | No hit | No description |
SuperFamily | SSF54171 | 4.58E-23 | 79 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-32 | 79 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-35 | 79 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.156 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-13 | 80 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEIMASAFHT HNSANNQIPH QEELTQPFQP SMKIXXXXXX XQAQFHHNQQ QLLLPHSHFS 60 GFLGPKPCLM KQPSKPVKLY RGVRQRHWGK WVAEIRLPKN RSRLWLGTFD TAEEAAVAYD 120 TAAYKLRGDF SRLNFPHLKD YLCHGLALFK PLHSSVDAKL QAICRSLNPQ GNSGDVKIEX 180 XXXXXXXXXX XXXTVVDFSE EAAFGECNNL LLKKYPSVEI DWAAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 78 | 136 | 4 | 63 | ATERF1 |
3gcc_A | 4e-21 | 78 | 136 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853381.1 | 2e-65 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | O65665 | 1e-52 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A4D9AKF5 | 4e-75 | A0A4D9AKF5_SALSN; EREBP-like factor | ||||
STRING | Migut.L00108.1.p | 6e-65 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |