PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100122570091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 343aa MW: 38958.1 Da PI: 4.4521

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100122570091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	89.5	5.5e-28	139	326	15	214
GRAS 15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++ +la+ +++ ++e +sp+g++m+++a ++ + + +++ +s++ ++a+++++++ + +f+h Ote100122570091\|100122570091 139 NNGSLAKVIVESIKEKSSPQGKTMEKVAYHMFNSKDDHDEY----------LKQD---SSKNFVTAFNVLYQTLVCGRFAH 206 56689**********************998764443222..........3333...37899999*********** PP GRAS 96 ltaNqaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 +aN aI e++ + +v Hi+ fdi++G+QWpaL++aL+ ++++ +R+T ++ e s e eet++rL++ A+e g Ote100122570091\|100122570091 207 NAANLAIIESIPDDATVlHIVEFDIGEGIQWPALMEALSRKQRP---VRLTSINLGEDRssSCWEFEETKRRLQDHAREYG 284 *******9996666*****************99877...9988666666889************* PP GRAS 174 vpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrll 214 ++++ + +++ l++++ ++ + +++E l+ n++++l ++ Ote100122570091\|100122570091 285 LRLDVEEKcIEDFLAEMRRRKKNRRRREWLVFNSMVALPHMX 326 999864245566667777777777***********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.287	98	343	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-25	139	326	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMHSEIFLPT SNSPFSAYQN PNDFDDVLFS LFEPSMASSD ELFDHDNVLI PDYDGFETIS 60 RRDIDDICDW IYANHDEGIS SSAEVFASVD EWSPGPSLDS SQDTQIFTNM QINMPGGLDN 120 ESSLLHLSKA YGEAMDGGNN GSLAKVIVES IKEKSSPQGK TMEKVAYHMF NSKDDHDEYL 180 KQDSSKNFVT AFNVLYQTLV CGRFAHNAAN LAIIESIPDD ATVLHIVEFD IGEGIQWPAL 240 MEALSRKQRP VRLTSINLGE DRSSSCWEFE ETKRRLQDHA REYGLRLDVE EKCIEDFLAE 300 MRRRKKNRRR REWLVFNSMV ALPHMXXXXX XXXXGGEAGW SSS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMHSEIFLPT SNSPFSAYQN PNDFDDVLFS LFEPSMASSD ELFDHDNVLI PDYDGFETIS  60
RRDIDDICDW IYANHDEGIS SSAEVFASVD EWSPGPSLDS SQDTQIFTNM QINMPGGLDN  120
ESSLLHLSKA YGEAMDGGNN GSLAKVIVES IKEKSSPQGK TMEKVAYHMF NSKDDHDEYL  180
KQDSSKNFVT AFNVLYQTLV CGRFAHNAAN LAIIESIPDD ATVLHIVEFD IGEGIQWPAL  240
MEALSRKQRP VRLTSINLGE DRSSSCWEFE ETKRRLQDHA REYGLRLDVE EKCIEDFLAE  300
MRRRKKNRRR REWLVFNSMV ALPHMXXXXX XXXXGGEAGW SSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095222.1	3e-96	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A4D9A2M5	1e-111	A0A4D9A2M5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38