PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100121660111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 501aa MW: 55036.8 Da PI: 7.5846

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100121660111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.3e-07	87	130	32	89
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +f+Cs+ g +++ +C a+l+++ + ++kw+vtk+ ++H+H++ Ote100121660111\|100121660111 87 QFTCSRDGLKKRAG--------------ESCGAMLRIEPRGESKWVVTKFMKDHSHTV 130 55555555555444..............45**************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MDAELVGVKE GNMGQHGGLT DDGGDVSNSS EDIDAFGNLL VEDGNFPXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXVYT DCSTFRQFTC SRDGLKKRAG ESCGAMLRIE PRGESKWVVT 120 KFMKDHSHTV VGRSKLRYLR PKRHFAATAN SVAETFQGID TVPSGIMYVS VDGNSVPSES 180 NHVVKNMTAS GLNHTVKNIG SMGFTSGYAN QRRTLVFTVT NVLTLPSHYI LKRWTRNAKS 240 IAADEQCELQ GHESLMTRYN TLCKEAIRFA EDGAISSETY SAAFLSLREG GKKVAGVKKS 300 VGKIAPSSSL VDGHTYDDRR SAINHETTPL LWPHQDEIVR CFNLNDTGVP SQTLSDPNVP 360 CMTPVSLTRD GGHSDNMLIL PCLKSMTWVM ENKNLAPANK VAVISLKLQD HGKTLTGESE 420 VKFSLSRVTL EPMLRSMAYI SEQLSSSANK VAVINLKSAL IQLQDAETTS GESEVKFQVS 480 KDTLGAMLRS MAYIREQLSN A

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MDAELVGVKE GNMGQHGGLT DDGGDVSNSS EDIDAFGNLL VEDGNFPXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXVYT DCSTFRQFTC SRDGLKKRAG ESCGAMLRIE PRGESKWVVT  120
KFMKDHSHTV VGRSKLRYLR PKRHFAATAN SVAETFQGID TVPSGIMYVS VDGNSVPSES  180
NHVVKNMTAS GLNHTVKNIG SMGFTSGYAN QRRTLVFTVT NVLTLPSHYI LKRWTRNAKS  240
IAADEQCELQ GHESLMTRYN TLCKEAIRFA EDGAISSETY SAAFLSLREG GKKVAGVKKS  300
VGKIAPSSSL VDGHTYDDRR SAINHETTPL LWPHQDEIVR CFNLNDTGVP SQTLSDPNVP  360
CMTPVSLTRD GGHSDNMLIL PCLKSMTWVM ENKNLAPANK VAVISLKLQD HGKTLTGESE  420
VKFSLSRVTL EPMLRSMAYI SEQLSSSANK VAVINLKSAL IQLQDAETTS GESEVKFQVS  480
KDTLGAMLRS MAYIREQLSN A

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090244.1	1e-140	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090246.1	1e-140	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_011090247.1	1e-140	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_020552429.1	1e-140	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	1e-112	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	B9S6M5	0.0	B9S6M5_RICCO; Uncharacterized protein
STRING	XP_002521644.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]