PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100121660071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | FAR1 | ||||||||
Protein Properties | Length: 510aa MW: 56226.2 Da PI: 8.2208 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.7 | 6.4e-07 | 87 | 130 | 32 | 89 |
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +f+Cs+ g +++ +C a+l+++ + ++kw+vtk+ ++H+H++ Ote100121660071|100121660071 87 QFTCSRDGLKKRAG--------------ESCGAMLRIEPRGESKWVVTKFMKDHSHTV 130 55555555555444..............45**************************87 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MDAELVGVKE GNMGQHGGLT DDGGDVSNSS EDIDAFGNLL VEDGNFPXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXVYT DCSTFRQFTC SRDGLKKRAG ESCGAMLRIE PRGESKWVVT 120 KFMKDHSHTV VGRSKLRYLR PKRHFAATAN SVAETFQGID TVPSGIMYVS VDGNSVPSES 180 NHVVKNMTAS GLNHTVKNIG SMGFTSGYAN QRRTLVFTVT NVLTLPSHYI LKRWTRNAKS 240 IAADEQCELQ GHESLMTRYN TLCKEAIRFA EDGAISSETY SAAFLSLREG GKKVAGVKKS 300 VGKIAPSSSL VDGHTYDDRR SAINHETTPL LWPHQDEIVR CFNLNDTGVP SQTLSDPNVP 360 CMTPVSLTRD GGHSDNMLIL PCLKSMTWVM ENKNLAPANK VAVISLKLQD HGKTLTGESE 420 VKFSLSRVTL EPMLRSMAYI SEQLSSSANK VAVINLKLQD AETTSGESEV KFQVSKDTLG 480 AMLRSMAYIR EQLSNAIEPK QDHSTKRPRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090244.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_011090246.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_011090247.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_020552429.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 1e-115 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | B9S6M5 | 0.0 | B9S6M5_RICCO; Uncharacterized protein | ||||
STRING | XP_002521644.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Publications ? help Back to Top | |||
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