PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100119120101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 26105.5 Da PI: 6.404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.9e-10 | 23 | 67 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ +Ed+++ +a +++ g +W++Ia++++ g+++ ++ ++ Ote100119120101|100119120101 23 SWSRQEDKIFEKALVEFPEGvgdRWHKIAEYLP-GKSPDEVEAHYE 67 6********************************.********9996 PP | |||||||
2 | Myb_DNA-binding | 43.7 | 6.2e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Ote100119120101|100119120101 132 PWTEDEHRLFLIGLERYGKGDWRSISRNVVVTRTPTQVASHAQKY 176 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.707 | 19 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 4.0E-9 | 20 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-6 | 22 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-9 | 23 | 70 | No hit | No description |
Pfam | PF00249 | 5.6E-9 | 23 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-10 | 23 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.521 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 127 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-17 | 128 | 179 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 129 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 129 | 179 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-9 | 132 | 177 | No hit | No description |
Pfam | PF00249 | 6.5E-12 | 132 | 176 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MNFFETMYSI DENECLMRCA AVSWSRQEDK IFEKALVEFP EGVGDRWHKI AEYLPGKSPD 60 EVEAHYEALL YDITEIDSGR VELPSYSDLS XXXXXXXWEN DRVRSRTPGQ ISFGSPGNRS 120 RHLDAERKKG TPWTEDEHRL FLIGLERYGK GDWRSISRNV VVTRTPTQVA SHAQKYFLRH 180 TSGKKERKRS SIHDITTAMD SLTVPPPAPT SLPNQGAFQD FNFSMPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-13 | 18 | 86 | 5 | 73 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084236.1 | 1e-111 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 2e-54 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A4D8ZA53 | 1e-128 | A0A4D8ZA53_SALSN; Uncharacterized protein | ||||
STRING | Migut.F01593.1.p | 8e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Publications ? help Back to Top | |||
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