PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100118870121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HB-other

Protein Properties

Length: 510aa MW: 57216.1 Da PI: 7.8419

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100118870121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.5e-19	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR ++ q+++Le+++ +++yps++++ +LA+++gLte+qV+ WF+ rR+k+kk Ote100118870121\|100118870121 14 KKRIVKSRAQVQALEKFYSEHKYPSESMKLQLAESIGLTEKQVSGWFCHRRIKDKK 69 899***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-21	2	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-18	9	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	10	70	IPR001356	Homeobox domain
SMART	SM00389	3.7E-19	12	74	IPR001356	Homeobox domain
CDD	cd00086	1.52E-16	14	69	No hit	No description
Pfam	PF00046	2.4E-16	14	69	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MHPEDDNAHS EKNKKRIVKS RAQVQALEKF YSEHKYPSES MKLQLAESIG LTEKQVSGWF 60 CHRRIKDKKL MNGENHAAVR QDRSGGVIQD RGSGHRQDSC GSTKQGNDKN LDSREVESGR 120 LTSKEFSAAE VIYDDDNNYA GIYNHTNDAS SGSTSSLQDI PPNYQNGGPS DAVISRYLIP 180 KFQSDVKGVK TRPGPSGYLK VKGRLENPAI AAVKRQLGKH YLEDGPPLGV EFDPLPPGAF 240 ESSMQDPVEE NYHTGEYVCG SPDFSNVRQN SKFCKGSQYP TSMAFFNSEI DGTNLRTRNG 300 SDIPDNYIYQ RSRLKTPLSN SCSYYPRSNS SLEFTESPVR YGSGIRSREN EYGSRHKPAI 360 EVMTIDTVQN YSNLQAYGGK FREKRAESWS RKFNDASTRV ALREKTENES SSLTTKGNKY 420 HSSGDKRLRG EVDGRICNDQ LINEHQVQIP YKNDTIAKKR VSEEFPCQQL PKATLMVDNL 480 PHNYQVTRPA TEMPSSFSED EESGGTSSMD

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MHPEDDNAHS EKNKKRIVKS RAQVQALEKF YSEHKYPSES MKLQLAESIG LTEKQVSGWF  60
CHRRIKDKKL MNGENHAAVR QDRSGGVIQD RGSGHRQDSC GSTKQGNDKN LDSREVESGR  120
LTSKEFSAAE VIYDDDNNYA GIYNHTNDAS SGSTSSLQDI PPNYQNGGPS DAVISRYLIP  180
KFQSDVKGVK TRPGPSGYLK VKGRLENPAI AAVKRQLGKH YLEDGPPLGV EFDPLPPGAF  240
ESSMQDPVEE NYHTGEYVCG SPDFSNVRQN SKFCKGSQYP TSMAFFNSEI DGTNLRTRNG  300
SDIPDNYIYQ RSRLKTPLSN SCSYYPRSNS SLEFTESPVR YGSGIRSREN EYGSRHKPAI  360
EVMTIDTVQN YSNLQAYGGK FREKRAESWS RKFNDASTRV ALREKTENES SSLTTKGNKY  420
HSSGDKRLRG EVDGRICNDQ LINEHQVQIP YKNDTIAKKR VSEEFPCQQL PKATLMVDNL  480
PHNYQVTRPA TEMPSSFSED EESGGTSSMD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	1e-177	uncharacterized protein LOC105163662 isoform X3
TrEMBL	A0A4D9AV99	0.0	A0A4D9AV99_SALSN; Uncharacterized protein
STRING	Migut.N02368.1.p	1e-175	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42