PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100118750041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19473.2 Da PI: 6.97 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.9 | 1.2e-41 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaC++lrr+Ca+ Cvlapyfp ++p kfa+vh++FGasn++kllk+lpe +r d ++s+vyeA+ar+rdP+yG++gvi Ote100118750041|100118750041 35 PCAACRILRRRCAETCVLAPYFPPTDPLKFAAVHRVFGASNIVKLLKKLPEAQRADGVRSMVYEANARLRDPIYGCTGVIC 115 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+++++l++ela+++++ Ote100118750041|100118750041 116 HLQKNIDELQVELARTQAQ 134 **************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.105 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-41 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MDXXXXXXXX XGVAAAECCP SVVSPPRSLS VNMSPCAACR ILRRRCAETC VLAPYFPPTD 60 PLKFAAVHRV FGASNIVKLL KKLPEAQRAD GVRSMVYEAN ARLRDPIYGC TGVICHLQKN 120 IDELQVELAR TQAQFLNMQC QNANLLDQFY MQMATPDVEN APLHHENHTT FVDEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-39 | 34 | 140 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-39 | 34 | 140 | 10 | 116 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077047.1 | 1e-64 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 8e-58 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D8ZPQ8 | 4e-66 | A0A4D8ZPQ8_SALSN; Uncharacterized protein | ||||
STRING | XP_009610820.1 | 4e-63 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |