PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100117730001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 265aa    MW: 29497.9 Da    PI: 8.7492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100117730001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.53.3e-16190215126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ +++tG C+yGd+C+FaHg
  Ote100117730001|100117730001 190 WKTELCNKWQETGACPYGDNCQFAHG 215
                                   8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.06E-11186221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-19186222IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-9189216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145189217IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-13190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-11223252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7224253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868227255IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4227254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQRGGVSYDS TSAVDKSPAA PLQFSSSTPF FSPSSPTYFN SDASFYSTLF QNYSSSSTCD  60
TASFDGGDSD LRLQDAXXXX XXXXXXXXXX XXXXXXXXXX TSAARTNLSA SPMQICPAAL  120
LYYSRGIASY PARRNNDGVT VPKSISVRAS GYLKTTRPGR DIGNKTQRVY AGGSKKENGK  180
EVDVYDQGMW KTELCNKWQE TGACPYGDNC QFAHGIKELR PVMRHPRYKT EVCRMMLAGD  240
NCPYGHRCHF RHALTHHDRC LYSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-21190252466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.17e-66zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D9BVN21e-87A0A4D9BVN2_SALSN; Butyrate response factor 1
STRINGMigut.L00491.1.p9e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129