PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100117530081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family S1Fa-like
Protein Properties Length: 131aa    MW: 14460.2 Da    PI: 10.6516
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100117530081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA129.78.2e-4164131370
                          S1FA   3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                                   v ++eakG+nPGlivllvvgglllvflvgny+ly+yaqk+lPP+kkk +skkk+k+e+l+qGv++PGe
  Ote100117530081|100117530081  64 VPNAEAKGFNPGLIVLLVVGGLLLVFLVGNYALYMYAQKTLPPKKKKAISKKKMKKERLRQGVSAPGE 131
                                   5679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.8E-3967131IPR006779DNA binding protein S1FA
ProDomPD0190139.0E-470131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
VASRLFVVLS GLYSPWLLPP FAKSFCSCLL RRVQHVHGEV FNGEFSKAGW ISDSEDVARL  60
KNTVPNAEAK GFNPGLIVLL VVGGLLLVFL VGNYALYMYA QKTLPPKKKK AISKKKMKKE  120
RLRQGVSAPG E
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.29e-27DNA-binding protein S1FA
RefseqXP_024026346.19e-27DNA-binding protein S1FA
SwissprotP425531e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA33e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.15e-26(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249