PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100116840161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 415aa MW: 46854.3 Da PI: 6.2965 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 233 | 275 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed +l++a++q G++ W+ Ia+ ++ gRt++ +k++w+ Ote100116840161|100116840161 233 KDVWSEDEDRILIEAHAQVGNK-WAEIAKSLP-GRTENTIKNHWN 275 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.437 | 188 | 227 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0012 | 192 | 229 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-8 | 196 | 227 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-16 | 200 | 234 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 203 | 227 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.99E-27 | 207 | 285 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.847 | 228 | 282 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 232 | 280 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 233 | 275 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 235 | 281 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.53E-13 | 236 | 278 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEPSTNNCIA ISLPTGFSNI NLKQEILDDD FGLDNLSSLK GFLQDFQDME KFPPPTSFLN 60 CSTGIQANGF DAYTSFSNGC FTDFGLNRYK PSEENGGVVL AMQDFQAGGF LNFSDMKDSS 120 MMTKTASEYH GPKPLSVVVP DVSSCVTGDN FGYHNEEGRK RSKNIVHNNK NNVRGSLSTK 180 KFVRGPKKSK SAKGQWTAEE DRKWSNIAQM LKGRIGKQCR ERWHNHLRPD IKKDVWSEDE 240 DRILIEAHAQ VGNKWAEIAK SLPGRTENTI KNHWNATKRR QFTRRKCRTK WPRPSSLLQN 300 YIKSLNFEKD NSNTSKKVQT PTTTDHGVVS NSSISAPPEL NMDFSTDDHH MVQEYGFDEV 360 QDLIFDDDHL LSGSSINAFM DDMPVGLPSE INGEESFDVE LPFDMSPLMQ CDYAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-39 | 193 | 281 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-39 | 193 | 281 | 4 | 104 | C-Myb DNA-Binding Domain |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101317.1 | 1e-134 | transcription factor MYB98-like | ||||
TrEMBL | A0A059PRP6 | 0.0 | A0A059PRP6_SALMI; MYB-related transcription factor | ||||
STRING | Migut.D01939.1.p | 1e-116 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |