PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100115880081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 337aa MW: 38578.4 Da PI: 6.7058

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100115880081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.4	4.7e-56	22	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdee++++yL +k+ ++++ + ++i e+d++k+ePwdLpkk++ +ekew+fF++rd+ky+tg r+nrat+sg Ote100115880081\|100115880081 22 LPPGFRFHPTDEEIIMHYLLPKIIDRRFVA-QAIGEADLNKCEPWDLPKKATMGEKEWFFFCQRDRKYPTGMRTNRATESG 101 79***********************999.89***********999999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkdke+++ ++ lvg+kktLvfykgrapkgekt+Wvmhe+rle Ote100115880081\|100115880081 102 YWKATGKDKEIYRGRNCLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 149 *********9999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-64	17	173	IPR003441	NAC domain
PROSITE profile	PS51005	58.648	22	173	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEVGLDGVGP SMVNEEDELV HLPPGFRFHP TDEEIIMHYL LPKIIDRRFV AQAIGEADLN 60 KCEPWDLPKK ATMGEKEWFF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIYRGRNCLV 120 GMKKTLVFYK GRAPKGEKTN WVMHEFRLEG NFSNYNFSRS AKEEFVVCRV FHKSSGIRRS 180 ELSRIDSLVD HLLADITPTD YNSVNERHQH ESKPTSRALL ENHKQYDQRN LFLPPQNYSI 240 STSSPFSLPQ LALPTPYLAY EQDAGFISSM IHDQTTAFQG ANLRPKVEHF SSNSMMSHSQ 300 DTGLSTDHEI TSKKAALDDD QGLAFSPNIS DLDSLWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-51	13	179	9	174	NAC domain-containing protein 19
3swm_B	2e-51	13	179	9	174	NAC domain-containing protein 19
3swm_C	2e-51	13	179	9	174	NAC domain-containing protein 19
3swm_D	2e-51	13	179	9	174	NAC domain-containing protein 19
3swp_A	2e-51	13	179	9	174	NAC domain-containing protein 19
3swp_B	2e-51	13	179	9	174	NAC domain-containing protein 19
3swp_C	2e-51	13	179	9	174	NAC domain-containing protein 19
3swp_D	2e-51	13	179	9	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078584.1	1e-141	NAC domain-containing protein 92
Swissprot	Q9FK44	6e-96	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2G9GVZ8	1e-120	A0A2G9GVZ8_9LAMI; Uncharacterized protein
STRING	EOY10726	1e-109	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]