PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100115020081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 529aa MW: 61455.9 Da PI: 5.5684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100115020081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.3e-22	71	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++ +k+ + +w++ ++ Ote100115020081\|100115020081 71 DFYNVYAKEQGFGIRVSNSWFRSKRRERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVILKLVDARTWRIVEV 146 6*******************99999***********99888.....9************************ PP FAR1 82 eleHnHela 90 el HnH+++ Ote100115020081\|100115020081 147 ELVHNHPVS 155 ****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-20	71	156	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.421	411	447	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-5	413	443	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-6	422	449	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MPSFPATSEF NTVMELVSLN SEPMFGEGDE YEDGDCLMVE HSDKPQSMHF EKEFLLPMVG 60 LEFESFDEAY DFYNVYAKEQ GFGIRVSNSW FRSKRRERYR AKLSCSSAGF KKKSEANNPR 120 PETRTGCPAM VILKLVDART WRIVEVELVH NHPVSPEIKR FYKSHKKMIL AAKKAQQPEP 180 VREVHTIKLY RTVADTESNR LSETDDRNTV CQSKLLNLKE GDALAAYNYF CLIKRQLKKA 240 IFGSLTISEF ETSWGEMISL HNLRENKWLQ VLYEERKKWA PVYLKDAFFF GMLPVSDDEV 300 CTAFFDGYVH KHTSLKEFLD KYDLALQRKF LEEATNDFES RSASFEPKTK SNFELQLSKV 360 YTKEMLKKCQ IEVEGMLSCI NIKQVATSGP ILTFVVEEQL EVDGSVEVRH YEVLYETSQV 420 EVRCICGFFN FKGYLCRHAL SVLKYNGIEE IPFQYILQRW NKDYKRNFLF NIAISDGDEG 480 SPPQWHDNLF SRGLQVVEEG AQSQEHYEAV MQEMDSLMAK FSIVDENSM

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MPSFPATSEF NTVMELVSLN SEPMFGEGDE YEDGDCLMVE HSDKPQSMHF EKEFLLPMVG  60
LEFESFDEAY DFYNVYAKEQ GFGIRVSNSW FRSKRRERYR AKLSCSSAGF KKKSEANNPR  120
PETRTGCPAM VILKLVDART WRIVEVELVH NHPVSPEIKR FYKSHKKMIL AAKKAQQPEP  180
VREVHTIKLY RTVADTESNR LSETDDRNTV CQSKLLNLKE GDALAAYNYF CLIKRQLKKA  240
IFGSLTISEF ETSWGEMISL HNLRENKWLQ VLYEERKKWA PVYLKDAFFF GMLPVSDDEV  300
CTAFFDGYVH KHTSLKEFLD KYDLALQRKF LEEATNDFES RSASFEPKTK SNFELQLSKV  360
YTKEMLKKCQ IEVEGMLSCI NIKQVATSGP ILTFVVEEQL EVDGSVEVRH YEVLYETSQV  420
EVRCICGFFN FKGYLCRHAL SVLKYNGIEE IPFQYILQRW NKDYKRNFLF NIAISDGDEG  480
SPPQWHDNLF SRGLQVVEEG AQSQEHYEAV MQEMDSLMAK FSIVDENSM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022754127.1	1e-164	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A4D8ZAR7	0.0	A0A4D8ZAR7_SALSN; Zinc finger SWIM domain-containing protein 3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70