PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100114930021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 413aa    MW: 46865.7 Da    PI: 6.464
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100114930021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.89.9e-103423791954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Ote100114930021|100114930021 342 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 379
                                   664559******************************88 PP
2BELL781.4e-252192811072
                          BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                    kL+ lleeV++rY+ y + ++ ++ sFea+aglg+ k+Yt+lAl a+S+hF  L++ai  qi
  Ote100114930021|100114930021 219 LKLIALLEEVERRYEEYSHHMEDLVHSFEAIAGLGAGKSYTALALLAMSKHFCRLRNAILAQI 281
                                   59***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-19145279IPR006563POX domain
PfamPF075261.5E-29151277IPR006563POX domain
CDDcd000861.90E-11323384No hitNo description
SMARTSM003892.4E-9323387IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27328389IPR009057Homeodomain-like
SuperFamilySSF466891.63E-17329390IPR009057Homeodomain-like
PfamPF059202.7E-17340379IPR008422Homeobox KN domain
PROSITE profilePS5007111.855342383IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVSEDSSPQP NNNNILHEFV TSNSFNENQF GSHHHFDASY SGSLPLSIHC LSERMSRSID  60
IVRTSQLPDE SDMTQDRHLI DLLGKSNEPS QQTQRLSLSL GSHHGYLTAL KQGCEMGYDR  120
FINGYSCDGS AYLNQSCLTH DFTNQSFAAG IGNSKYLHPA QSLLQEMLSV GGENIDRSNR  180
KYMERLGRKE PFRLSSKLRA ELSSCEVVCE KHGDYVDLLK LIALLEEVER RYEEYSHHME  240
DLVHSFEAIA GLGAGKSYTA LALLAMSKHF CRLRNAILAQ IHATKQKVAK DMPKISSRLS  300
QLCLLDQEAR QSRSIMHNSV QAWRPLRGLP ETSVTILRAW LFEHFLHPYP NDSEKLMLAS  360
QTGLSKNQVS NWFINARVRL WKPMIEEMYK EEFEDSSTES DQLLTNSSTD LGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-17329387563Homeobox protein Meis2
3k2a_B6e-17329387563Homeobox protein Meis2
4xrm_A6e-17329387563Homeobox protein Meis2
4xrm_B6e-17329387563Homeobox protein Meis2
4xrs_A5e-17329386158Homeobox protein Meis1
4xrs_B5e-17329386158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083617.11e-179BEL1-like homeodomain protein 11
SwissprotQ1PFD14e-83BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A4D9C0I30.0A0A4D9C0I3_SALSN; Uncharacterized protein
STRINGVIT_18s0001g13130.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228