PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100112970071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9927.1 Da PI: 8.4763 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.2e-09 | 5 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a + + ++ +W+ Iar ++ g+++++++ ++ Ote100112970071|100112970071 5 SWTAGQNKQFEEALAVHDKDtphRWHNIARAVN-GKSAEDVRRHY 48 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.362 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-7 | 2 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-12 | 4 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-7 | 5 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-6 | 5 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 5 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MASSSWTAGQ NKQFEEALAV HDKDTPHRWH NIARAVNGKS AEDVRRHYEA LEKDIIKIEN 60 DQVPIPNYTG YGNQYCRLMK NLKLQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-24 | 6 | 85 | 11 | 93 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083673.1 | 3e-39 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A022R1R6 | 2e-36 | A0A022R1R6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.N00487.1.p | 4e-37 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |