PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100112110011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 122aa    MW: 13629 Da    PI: 7.5055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100112110011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-191667256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                  +y+GVr +  +g+++AeIrd s    + +r++lg+f taeeAa+a+++a+ +++g+
  Ote100112110011|100112110011 16 KYRGVRKRQ-WGKYAAEIRDTSR---QgARVWLGTFNTAEEAARAYDRAAYEMRGH 67
                                  8*****888.**********432...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.49E-181675No hitNo description
PfamPF008471.9E-141667IPR001471AP2/ERF domain
PROSITE profilePS5103223.4461674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-311676IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-231675IPR016177DNA-binding domain
SMARTSM003806.6E-341680IPR001471AP2/ERF domain
PRINTSPR003672.4E-111728IPR001471AP2/ERF domain
PRINTSPR003672.4E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEEGGSSSGG KGGEVKYRGV RKRQWGKYAA EIRDTSRQGA RVWLGTFNTA EEAARAYDRA  60
AYEMRGHLAI LNFPEEYNLP SSSSHFAAPQ SGSQQGRQVF EFECYDDKLL EDLLDDKKGK  120
KG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-3611091114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843103.15e-47PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_026453213.11e-47ethylene-responsive transcription factor 14-like
SwissprotQ9LTC57e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T02e-60A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGMigut.N00263.1.p2e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]