PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100112080011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 908aa MW: 100089 Da PI: 6.8252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100112080011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	701	746	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++++L+el+P++ K +Ka++L +++ Y+ksL Ote100112080011\|100112080011 701 VHNLSERRRRDRINEKMQTLQELIPNC-----NKADKASMLDEVIGYLKSL 746 6***********************8.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03283	1.6E-158	59	411	IPR004963	Pectinacetylesterase/NOTUM
CDD	cd00083	1.48E-15	691	751	No hit	No description
SuperFamily	SSF47459	8.11E-19	694	756	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-19	694	755	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.619	697	746	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-12	701	746	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-17	703	752	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016787	Molecular Function	hydrolase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MGKLVLICVL LVLSRWGAQS LELDAFFSRN SSSDVSFLES ISHLESVYGV ASVAVPPDAL 60 MVGLTLIQGA AAKGAVCLDG TVPGYHLHRG FGSGANSWLI QLEGGGWCNS LRSCIYRKKT 120 HRGSSTLFEK QIPFTGILSN KAEENPDFFN WNRVKVRYCD GASFAGDSCR LAXXXXXXXX 180 XXFRGQRIWL AAMEDLMSKG MRNADQALLS GCSAGGLASI LHCDEFQSLF PKSVKVKCLS 240 DAGLFMDAAD VSGGHTMRAF FDGVVSLQGV QENLPSYCTD HLDATSCFFP QNLIAGIKTP 300 LFILNAAYDS WQVQEIVAPP AADPQGNWHD CKSNNERCSA SQIEVLQDFR NQMLSAVRGF 360 SASRVNGLFI NSCFAHCQSE RQDTWFADDS PVINNKPIAL AVGDWYFDRA TVKTIDCAYP 420 CDKTCHNLIN KFCLLNPWPP QKLDTSAMDP KYSIQTNRFS KSQMNSKNSA RMPLYEFLRL 480 AIEKLESSQH KPYSIDPSLE TENDLVGGAT KIDSITTDQV SRSPNAPNDY SSAVLPQTPS 540 VYDKKASDGD RFSSFRNGSS SDQIVSDLFN SYGAELPSFR THSLHSWMQE KDNDKGGCQD 600 GIFGKNGEVE PTAEPNEVAK NIGLDTFLNS DKRPIRATSS SASSRNSADD HRASCGEKRT 660 KKRFLDNEES ECQSDELQNA AAGAKKPSQD RRSKRSRAAE VHNLSERRRR DRINEKMQTL 720 QELIPNCNKA DKASMLDEVI GYLKSLKHQV QILSMGSGLC VPPLMLGTQH LYHASIPHFS 780 YMGSCTSFGY INGGSPRCPV FPTTVGPFLP ISGQLPLTGW PVRPTAYPKL NHDDLIMSKN 840 SRIVFNMEAS RSSQSVVVEA DTDSQTKRAS IENANKIGLE LIQLPEMLTE DAGGMSQLLT 900 KERDWGFL

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MGKLVLICVL LVLSRWGAQS LELDAFFSRN SSSDVSFLES ISHLESVYGV ASVAVPPDAL  60
MVGLTLIQGA AAKGAVCLDG TVPGYHLHRG FGSGANSWLI QLEGGGWCNS LRSCIYRKKT  120
HRGSSTLFEK QIPFTGILSN KAEENPDFFN WNRVKVRYCD GASFAGDSCR LAXXXXXXXX  180
XXFRGQRIWL AAMEDLMSKG MRNADQALLS GCSAGGLASI LHCDEFQSLF PKSVKVKCLS  240
DAGLFMDAAD VSGGHTMRAF FDGVVSLQGV QENLPSYCTD HLDATSCFFP QNLIAGIKTP  300
LFILNAAYDS WQVQEIVAPP AADPQGNWHD CKSNNERCSA SQIEVLQDFR NQMLSAVRGF  360
SASRVNGLFI NSCFAHCQSE RQDTWFADDS PVINNKPIAL AVGDWYFDRA TVKTIDCAYP  420
CDKTCHNLIN KFCLLNPWPP QKLDTSAMDP KYSIQTNRFS KSQMNSKNSA RMPLYEFLRL  480
AIEKLESSQH KPYSIDPSLE TENDLVGGAT KIDSITTDQV SRSPNAPNDY SSAVLPQTPS  540
VYDKKASDGD RFSSFRNGSS SDQIVSDLFN SYGAELPSFR THSLHSWMQE KDNDKGGCQD  600
GIFGKNGEVE PTAEPNEVAK NIGLDTFLNS DKRPIRATSS SASSRNSADD HRASCGEKRT  660
KKRFLDNEES ECQSDELQNA AAGAKKPSQD RRSKRSRAAE VHNLSERRRR DRINEKMQTL  720
QELIPNCNKA DKASMLDEVI GYLKSLKHQV QILSMGSGLC VPPLMLGTQH LYHASIPHFS  780
YMGSCTSFGY INGGSPRCPV FPTTVGPFLP ISGQLPLTGW PVRPTAYPKL NHDDLIMSKN  840
SRIVFNMEAS RSSQSVVVEA DTDSQTKRAS IENANKIGLE LIQLPEMLTE DAGGMSQLLT  900
KERDWGFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4uyu_A	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uyu_B	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uyw_A	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uyw_B	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uz1_A	4e-20	75	313	22	267	NOTUM
4uz5_A	4e-20	75	313	22	267	NOTUM
4uz6_A	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uz6_B	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uz7_A	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uz7_B	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
4uz9_A	4e-20	75	313	22	267	PROTEIN NOTUM HOMOLOG
6r8p_A	4e-20	75	313	22	267	Palmitoleoyl-protein carboxylesterase NOTUM
6r8q_A	4e-20	75	313	22	267	Palmitoleoyl-protein carboxylesterase NOTUM
6r8r_A	4e-20	75	313	22	267	Palmitoleoyl-protein carboxylesterase NOTUM