PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100112000051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 819aa MW: 93968.8 Da PI: 8.8824

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100112000051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.8e-23	77	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fY++YA +vGF +++++s++sk++g++++ + Csk g+r++++++ ++++ t+t+Cka++++kk+ +gkw + +++ Ote100112000051\|100112000051 77 FYRDYAWSVGFGITIKASRRSKKSGKFIDIKIACSKFGRRRQSSTT----ISQKSCTKTDCKASMHIKKRLEGKWFIFNFV 153 9**************************************99888....89999********************** PP FAR1 83 leHnHelap 91 + HnHel p Ote100112000051\|100112000051 154 EGHNHELLP 162 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-21	77	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-8	291	335	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.532	524	560	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-6	532	557	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
METDLELPAS RKGRLNTELD KXXXXXXXXX XXXXXXXILG GGDGVNLNAS TDNTSRVDSY 60 MPQLGMEFET KEAAYAFYRD YAWSVGFGIT IKASRRSKKS GKFIDIKIAC SKFGRRRQSS 120 TTISQKSCTK TDCKASMHIK KRLEGKWFIF NFVEGHNHEL LPDYFYNTTR GRQNEDANAV 180 CQKRGLQLVL DDKDVELLLD YFMHMQAEAP GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XMRTWLRAVA 300 GHSPKAVITD NNRSLIEAAR DVFPNASHFF CPWHVFTEVG PNLSNKVNEF ELFSMKFKKC 360 AYRSWSSEEF DRRWKEMVKQ FDLTDDKWMQ SLYEDRRRWI PTYMTEVFLG GFCTAERSQS 420 VVSFFDKYLQ KETTFSKFID QYKLFLNKGH EEELKAELET RSSGPVLTSH SPFEKQMSKL 480 YTNAIFKKFR AEVSGMLSCA LAIKGDDGET IIYNVDDLER KQSFTVSWSK AKYETYCLCR 540 LFEYSGFLCR HALSVLQLSG VSTIPPKYIL RRWTQTAKIM DIAHQESVKA NFRVQRLNDI 600 CKLAIKLGEE SSLSGEAYKV AYHALEDAVE HCARLNCSLK RNLETTKTAA YGLPEVGKNK 660 DKNIGKISKL KVPKKGKVRA ESETLSIGIE ESIQDVEQLN QRSNRLHDCY RSQQDLQGME 720 SGTRTPIISG YGGAEHGGLG LGHLTSPSSM QDCYYGDQPL MQGVLRHFSA RSGHHAATQQ 780 NMNALGRFSF RPTSWEGFQL RDSLHNETSV NMMSKNLHN

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

METDLELPAS RKGRLNTELD KXXXXXXXXX XXXXXXXILG GGDGVNLNAS TDNTSRVDSY  60
MPQLGMEFET KEAAYAFYRD YAWSVGFGIT IKASRRSKKS GKFIDIKIAC SKFGRRRQSS  120
TTISQKSCTK TDCKASMHIK KRLEGKWFIF NFVEGHNHEL LPDYFYNTTR GRQNEDANAV  180
CQKRGLQLVL DDKDVELLLD YFMHMQAEAP GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XMRTWLRAVA  300
GHSPKAVITD NNRSLIEAAR DVFPNASHFF CPWHVFTEVG PNLSNKVNEF ELFSMKFKKC  360
AYRSWSSEEF DRRWKEMVKQ FDLTDDKWMQ SLYEDRRRWI PTYMTEVFLG GFCTAERSQS  420
VVSFFDKYLQ KETTFSKFID QYKLFLNKGH EEELKAELET RSSGPVLTSH SPFEKQMSKL  480
YTNAIFKKFR AEVSGMLSCA LAIKGDDGET IIYNVDDLER KQSFTVSWSK AKYETYCLCR  540
LFEYSGFLCR HALSVLQLSG VSTIPPKYIL RRWTQTAKIM DIAHQESVKA NFRVQRLNDI  600
CKLAIKLGEE SSLSGEAYKV AYHALEDAVE HCARLNCSLK RNLETTKTAA YGLPEVGKNK  660
DKNIGKISKL KVPKKGKVRA ESETLSIGIE ESIQDVEQLN QRSNRLHDCY RSQQDLQGME  720
SGTRTPIISG YGGAEHGGLG LGHLTSPSSM QDCYYGDQPL MQGVLRHFSA RSGHHAATQQ  780
NMNALGRFSF RPTSWEGFQL RDSLHNETSV NMMSKNLHN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093711.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
Refseq	XP_020553553.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBL	A0A4D8YIS8	0.0	A0A4D8YIS8_SALSN; Uncharacterized protein
STRING	Migut.J00594.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103