PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111640021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 498aa    MW: 55394.3 Da    PI: 5.8151
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111640021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like765e-24183236155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   kp++ Wt+ LH rF+ea++ + G e+ +Pk+il++m+v+gLt+e+v+SHLQkYR+
  Ote100111640021|100111640021 183 KPKVIWTNALHYRFLEAIRTI-GLERSVPKKILQVMNVPGLTRENVASHLQKYRM 236
                                   799******************.********************************7 PP
2Response_reg74.93.1e-25261341109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   +l+vdD+ + ++ ++ +l+k +y ev +a+++++al  l+ k   +Dl++ Di mp+m+G+el + i+ e  +lp+++++ 
  Ote100111640021|100111640021  26 ILVVDDDTTCLSFVAALLKKLKY-EVVTAKHPKDALCALRIKGgaFDLVVSDIHMPDMNGFELQQAIAHEF-NLPVVLMSV 104
                                   89*********************.*************99666566**********************8888.9******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                    ++e  + + +k Ga  f+sKp++p++l +
  Ote100111640021|100111640021 105 DNKEVVVSKGMKNGAACFISKPVSPNDLKD 134
                                   ***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-3118137No hitNo description
SuperFamilySSF521724.55E-2922140IPR011006CheY-like superfamily
SMARTSM004482.1E-2624136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.97125140IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-2226134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-2427140No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25181240IPR009057Homeodomain-like
SuperFamilySSF466899.68E-18181240IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-23183236IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MQKSKMSCEN ISFNYESRRS CNSISILVVD DDTTCLSFVA ALLKKLKYEV VTAKHPKDAL  60
CALRIKGGAF DLVVSDIHMP DMNGFELQQA IAHEFNLPVV LMSVDNKEVV VSKGMKNGAA  120
CFISKPVSPN DLKDLWQFAA MKKKSSHVLI DAKSSASTWN EGKHSNSKRR PASKEGGEVN  180
TKKPKVIWTN ALHYRFLEAI RTIGLERSVP KKILQVMNVP GLTRENVASH LQKYRMFLKR  240
VSDASYKLEI GDDESRSCLS NYASTTTSNS LLMLNRLQEL GGLPAAGTNR FSYQENPSVS  300
LVHQSLGHHQ LISIAGGLHN TKMTTPTNHH SNDDFDASSQ AGTQVISDCV DQINQTNYIG  360
YDIRSLHQEL QNNIINLDQQ TQYFEPNRFY LSHGVGDPHD NLLLQQQSDL PLIEDLDEGG  420
LLHESAISSM CDPLMVTDFD NNVLSDQVNN QNGCDYTASS IFYGGVNNPS YEQAREEEDV  480
LESLLAFGED QIQTLEGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20182242464ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076492.21e-114two-component response regulator ARR10-like
TrEMBLA0A4D9BPT31e-131A0A4D9BPT3_SALSN; Two-component response regulator ARR-B family
STRINGMigut.F01146.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038