PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100111460001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19890.5 Da PI: 9.9138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.3e-52 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yL+kkv+ kk++l +vi+++d++k+ePw++++k+k +++wyfFs++dkky+tg+r+nrat Ote100111460001|100111460001 16 VPPGFRFHPTEEELLHYYLRKKVACKKIDL-DVIRDIDLNKLEPWEIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRAT 95 69****************************.9***************964444222455********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk ++s + + +g++ktLvfy grap+g+k+dW+mheyrl Ote100111460001|100111460001 96 AAGFWKATGRDKVIHS-NFRRIGMRKTLVFYGGRAPHGQKSDWIMHEYRL 144 **************99.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-54 | 13 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.105 | 16 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MSSEDMNLSV NGNSKVPPGF RFHPTEEELL HYYLRKKVAC KKIDLDVIRD IDLNKLEPWE 60 IQEKCKIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIH SNFRRIGMRK 120 TLVFYGGRAP HGQKSDWIMH EYRLDDNATS HDSTNVGQSL SLFNLPRNSW L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 16 | 156 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 16 | 156 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 16 | 156 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 16 | 156 | 17 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swm_B | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swm_C | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swm_D | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swp_A | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swp_B | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swp_C | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
3swp_D | 6e-47 | 16 | 156 | 20 | 157 | NAC domain-containing protein 19 |
4dul_A | 5e-47 | 16 | 156 | 17 | 154 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 16 | 156 | 17 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070696.1 | 1e-102 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 5e-95 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2G9GSV0 | 1e-103 | A0A2G9GSV0_9LAMI; Uncharacterized protein | ||||
STRING | XP_010100216.1 | 1e-100 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |