PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111460001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 171aa    MW: 19890.5 Da    PI: 9.9138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111460001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.3e-52161441128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPt+eel+++yL+kkv+ kk++l +vi+++d++k+ePw++++k+k     +++wyfFs++dkky+tg+r+nrat
  Ote100111460001|100111460001  16 VPPGFRFHPTEEELLHYYLRKKVACKKIDL-DVIRDIDLNKLEPWEIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRAT 95 
                                   69****************************.9***************964444222455********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++g+Wkatg+dk ++s + + +g++ktLvfy grap+g+k+dW+mheyrl
  Ote100111460001|100111460001  96 AAGFWKATGRDKVIHS-NFRRIGMRKTLVFYGGRAPHGQKSDWIMHEYRL 144
                                   **************99.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5413152IPR003441NAC domain
PROSITE profilePS5100551.10516168IPR003441NAC domain
PfamPF023653.2E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSSEDMNLSV NGNSKVPPGF RFHPTEEELL HYYLRKKVAC KKIDLDVIRD IDLNKLEPWE  60
IQEKCKIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIH SNFRRIGMRK  120
TLVFYGGRAP HGQKSDWIMH EYRLDDNATS HDSTNVGQSL SLFNLPRNSW L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-471615617154NO APICAL MERISTEM PROTEIN
1ut4_B5e-471615617154NO APICAL MERISTEM PROTEIN
1ut7_A5e-471615617154NO APICAL MERISTEM PROTEIN
1ut7_B5e-471615617154NO APICAL MERISTEM PROTEIN
3swm_A6e-471615620157NAC domain-containing protein 19
3swm_B6e-471615620157NAC domain-containing protein 19
3swm_C6e-471615620157NAC domain-containing protein 19
3swm_D6e-471615620157NAC domain-containing protein 19
3swp_A6e-471615620157NAC domain-containing protein 19
3swp_B6e-471615620157NAC domain-containing protein 19
3swp_C6e-471615620157NAC domain-containing protein 19
3swp_D6e-471615620157NAC domain-containing protein 19
4dul_A5e-471615617154NAC domain-containing protein 19
4dul_B5e-471615617154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070696.11e-102NAC domain-containing protein 43
SwissprotQ84WP65e-95NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2G9GSV01e-103A0A2G9GSV0_9LAMI; Uncharacterized protein
STRINGXP_010100216.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]