PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100111420031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 274aa MW: 30913.2 Da PI: 8.2082

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100111420031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	204.4	3.1e-63	67	227	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskr 74 s +++CqdCGnqakkdCah+RCRtCCksrgfdC+th+kstWvpaakrr+r qq+ a s+k+ + Ote100111420031\|100111420031 67 SEGVNCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHIKSTWVPAAKRRQRLQQQLADSTKRIRXXxxxxxxxxxXXXX--- 144 56789*******************************************7776666666666554666554432222... PP DUF702 75 krel......kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149 +++ + ++ +e +lP+e++s+avfrc+rvs+vddgee++aYqtav+i GhvfkGiLyd Ote100111420031\|100111420031 145 ---XxxxxxxXXXXXXXXXXXXIPEIKDRNRFELGNLPAELNSPAVFRCIRVSAVDDGEEHYAYQTAVNICGHVFKGILYD 222 ...12333335667777888899999999999********************************************* PP DUF702 150 qGlee 154 qG ++ Ote100111420031\|100111420031 223 QGSDS 227 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-58	69	226	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.9E-28	71	113	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.5E-27	178	224	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSGFFSLGGK EQQEDPETDS LKPEIYNXXX XXXXXXXXXX XXXXNPPTTT PPPRSCGLPG 60 QMVRRGSEGV NCQDCGNQAK KDCAHMRCRT CCKSRGFDCQ THIKSTWVPA AKRRQRLQQQ 120 LADSTKRIRX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIPEIKDR NRFELGNLPA 180 ELNSPAVFRC IRVSAVDDGE EHYAYQTAVN ICGHVFKGIL YDQGSDSRHR ESQQLPLDLI 240 TASGSTSTML DPSNYPTPLC AFMAGTQFFP PPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022856966.1	5e-74	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A4D8YZA2	2e-74	A0A4D8YZA2_SALSN; Uncharacterized protein
STRING	Gorai.002G125600.1	3e-64	(Gossypium raimondii)
STRING	Migut.N03122.1.p	4e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110