PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100110780031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-X1
Protein Properties Length: 594aa    MW: 66416.6 Da    PI: 8.4659
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100110780031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.3e-06111130120
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                   CG+H C + C+ G+CppC++
  Ote100110780031|100110780031 111 CGRHACRRRCCDGDCPPCSE 130
                                   ******************85 PP
2zf-NF-X118.44.7e-06140157320
                      zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                                   +HkC ++CH+G C pCp+
  Ote100110780031|100110780031 140 NHKCPAPCHRGACAPCPL 157
                                   7***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.98E-5137No hitNo description
PfamPF014220.005422IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014423IPR000967Zinc finger, NF-X1-type
CDDcd060081.92E-74897No hitNo description
PfamPF014220.0485877IPR000967Zinc finger, NF-X1-type
SMARTSM004385.35878IPR000967Zinc finger, NF-X1-type
CDDcd060081.99E-7101149No hitNo description
PfamPF014225.5E-4111129IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013111130IPR000967Zinc finger, NF-X1-type
CDDcd060084.22E-10128176No hitNo description
PfamPF014220.0056138156IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0041138157IPR000967Zinc finger, NF-X1-type
SMARTSM00438160195234IPR000967Zinc finger, NF-X1-type
PfamPF014224.4223233IPR000967Zinc finger, NF-X1-type
SMARTSM0043846242287IPR000967Zinc finger, NF-X1-type
PfamPF014220.12324335IPR000967Zinc finger, NF-X1-type
SMARTSM0043817324352IPR000967Zinc finger, NF-X1-type
SMARTSM004384.5362380IPR000967Zinc finger, NF-X1-type
SMARTSM004387.7425446IPR000967Zinc finger, NF-X1-type
PfamPF014221.2427444IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MLSCGRHVCE RGCHEGECGD CPSQGKRSCP CGKRVYEGVA CDVSVPLCGA TCGKLLSCGF  60
HRCPERCHHG PCVETCRIVV TKSCRCRSFK KQVPCYQELT CERKCQKLRD CGRHACRRRC  120
CDGDCPPCSE ICDRKLRCRN HKCPAPCHRG ACAPCPLMVR ISCSCGKTHF EVPCGTETEQ  180
KPPKCPKPCS VAPLCRHAPN RKXXXXXXXX XXXXXXXXLI PHRCHYGACP PCRATCGERY  240
PCGHECQLRC HGPAPPPCPE FTLKPKKKRA NNPTEATPGS PCPPCPELVL RSCFGNHIGA  300
ERTMLCSNSA DFSCDNLCGS PLPCGNHYCT YVCHPLKGHS SKIGESCEVC NLPCDKERDP  360
KCPHPCPMRC HPEECPPCKT LIKRSCHCGS MVHVFECKYY NCMSEKEQMV ARSCKGPCHR  420
KLPNCTHLCP ETCHPGPCPL PDKCSKKVTV RCGCQRLKKE WLCEDVQAAY CSSGCDPKEV  480
LKNQFGVGLL PCDSDCKSKV KVPDVELHFR QVKPKEEKEG DKAPKRRRRK QRVHEEESVS  540
RLQKIIGVAR CLAMVVVVAA VVFASAYFGY KGLLWLSDWM NQIEARQRRR FSRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076693.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G9GDU00.0A0A2G9GDU0_9LAMI; Transcription factor NF-X1
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921