PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100109630051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 327aa MW: 36399 Da PI: 6.9967

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100109630051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.2e-10	111	146	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++ Ote100109630051\|100109630051 111 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSD 146 899***************************.97 PP
2	Myb_DNA-binding	35.7	2.1e-11	180	211	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 a++++G++ W+ Iar ++ gRt++ +k++w+ + Ote100109630051\|100109630051 180 AAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 211 599****.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	8.506	106	155	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-11	106	147	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-9	110	214	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.53E-16	111	212	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-9	111	146	IPR001005	SANT/Myb domain
CDD	cd00167	5.99E-8	114	146	No hit	No description
PROSITE profile	PS51294	11.407	162	216	IPR017930	Myb domain
CDD	cd00167	3.27E-6	180	212	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-11	180	210	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-8	181	210	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGSESCGIRR ISNHSSLYNA LSSSPMAGMV FPDLKNLYIN QNVGFPAPEN PHWGFTLADK 60 GTVENFSGEN NDQMIDLNTT LNEEVEQDSS DMHGSSKDSN NGNAQSKLCA RGHWRPAEDA 120 KLKELVALYG PQNWNLIAEK LEGRSDCGGS ISWTLGLIEG RLARRRXXXX XXXXXXXXMA 180 AHRLYGNKWA MIARLFPGRT DNAVKNHWHV VMARKYREQS TAYRRRKMGQ FVVRRADDAA 240 TTPPPFPPGG AIFCGSCQFA SPSCWMPQPF FEGGKQRKVE WEVEGMSVMQ RLSHYHFPSE 300 AGGEGSEAVA EEIIEAPFID FLGVGAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070989.1	6e-81	transcriptional activator Myb
TrEMBL	A0A2G9I2T9	5e-86	A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRING	Migut.E00083.1.p	8e-68	(Erythranthe guttata)